Difference between revisions of "Tiso gene 20054"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=OROPRIBTRANS-RXN OROPRIBTRANS-RXN] == * direction: ** REVERSIBLE * common name: ** orotate_phosphor...")
(Created page with "Category:Gene == Gene Tiso_gene_20054 == * right end position: ** 723 * transcription direction: ** POSITIVE * left end position: ** 8 * centisome position: ** 0.44469148...")
 
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=OROPRIBTRANS-RXN OROPRIBTRANS-RXN] ==
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== Gene Tiso_gene_20054 ==
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* direction:
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* right end position:
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** REVERSIBLE
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** 723
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* common name:
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* transcription direction:
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** orotate_phosphoribosyltransferase
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** POSITIVE
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** trna_(cytosine_-c_)-methyltransferase
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* left end position:
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* ec number:
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** 8
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** [http://enzyme.expasy.org/EC/2.4.2.10 EC-2.4.2.10]
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* centisome position:
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** 0.44469148   
 
* Synonym(s):
 
* Synonym(s):
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** FNR
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[1.18.1.2-RXN]]
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** 1 [[PPI]][c] '''+''' 1 [[OROTIDINE-5-PHOSPHATE]][c] '''<=>''' 1 [[OROTATE]][c] '''+''' 1 [[PRPP]][c]
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* With common name(s):
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** 1 diphosphate[c] '''+''' 1 orotidine 5'-phosphate[c] '''<=>''' 1 orotate[c] '''+''' 1 5-phospho-&alpha;-D-ribose 1-diphosphate[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_11163]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_18647]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-synechocystis]]
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* Gene: [[Tiso_gene_11164]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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*** Assignment: ec-number
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== Pathways  ==
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** Source: [[annotation-experimental_annotation]]
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* [[PWY-7790]], UMP biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7790 PWY-7790]
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*** Assignment: ec-number
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** '''6''' reactions found over '''6''' reactions in the full pathway
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* Reaction: [[RXN-17897]]
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* [[PWY-7791]], UMP biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7791 PWY-7791]
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** '''5''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-5686]], UMP biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5686 PWY-5686]
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** '''6''' reactions found over '''6''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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== Pathways associated ==
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* [[PWY-7230]]
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* [[PWY-101]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=723}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10380 10380]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=8}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01870 R01870]
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{{#set: centisome position=0.44469148    }}
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* UNIPROT:
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{{#set: common name=FNR}}
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** [http://www.uniprot.org/uniprot/P08309 P08309]
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{{#set: reaction associated=1.18.1.2-RXN|RXN-17897}}
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** [http://www.uniprot.org/uniprot/P11172 P11172]
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{{#set: pathway associated=PWY-7230|PWY-101}}
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** [http://www.uniprot.org/uniprot/P18132 P18132]
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** [http://www.uniprot.org/uniprot/P77889 P77889]
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** [http://www.uniprot.org/uniprot/P0A5U0 P0A5U0]
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** [http://www.uniprot.org/uniprot/Q9PIR1 Q9PIR1]
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** [http://www.uniprot.org/uniprot/O67742 O67742]
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** [http://www.uniprot.org/uniprot/O58855 O58855]
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** [http://www.uniprot.org/uniprot/Q9Z7U6 Q9Z7U6]
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** [http://www.uniprot.org/uniprot/Q9Y9D8 Q9Y9D8]
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** [http://www.uniprot.org/uniprot/P56814 P56814]
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** [http://www.uniprot.org/uniprot/Q58509 Q58509]
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** [http://www.uniprot.org/uniprot/O28533 O28533]
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** [http://www.uniprot.org/uniprot/Q9CGM8 Q9CGM8]
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** [http://www.uniprot.org/uniprot/P25972 P25972]
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** [http://www.uniprot.org/uniprot/O27888 O27888]
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** [http://www.uniprot.org/uniprot/P65915 P65915]
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** [http://www.uniprot.org/uniprot/P46534 P46534]
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** [http://www.uniprot.org/uniprot/P43855 P43855]
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** [http://www.uniprot.org/uniprot/P31754 P31754]
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** [http://www.uniprot.org/uniprot/P18904 P18904]
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** [http://www.uniprot.org/uniprot/Q01637 Q01637]
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** [http://www.uniprot.org/uniprot/P09556 P09556]
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** [http://www.uniprot.org/uniprot/P21846 P21846]
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** [http://www.uniprot.org/uniprot/P35788 P35788]
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** [http://www.uniprot.org/uniprot/P08870 P08870]
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** [http://www.uniprot.org/uniprot/Q18516 Q18516]
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** [http://www.uniprot.org/uniprot/Q45918 Q45918]
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** [http://www.uniprot.org/uniprot/Q42586 Q42586]
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** [http://www.uniprot.org/uniprot/P41923 P41923]
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** [http://www.uniprot.org/uniprot/Q55574 Q55574]
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** [http://www.uniprot.org/uniprot/Q42942 Q42942]
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** [http://www.uniprot.org/uniprot/O76139 O76139]
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** [http://www.uniprot.org/uniprot/O61790 O61790]
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** [http://www.uniprot.org/uniprot/Q9X8R7 Q9X8R7]
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** [http://www.uniprot.org/uniprot/O94331 O94331]
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** [http://www.uniprot.org/uniprot/P30402 P30402]
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** [http://www.uniprot.org/uniprot/P13298 P13298]
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** [http://www.uniprot.org/uniprot/P0A7E3 P0A7E3]
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=orotate_phosphoribosyltransferase}}
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{{#set: common name=trna_(cytosine_-c_)-methyltransferase}}
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{{#set: ec number=EC-2.4.2.10}}
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{{#set: gene associated=Tiso_gene_11163|Tiso_gene_18647|Tiso_gene_11164}}
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{{#set: in pathway=PWY-7790|PWY-7791|PWY-5686}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: reconstruction source=manual-primary_network|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 20:13, 21 March 2018

Gene Tiso_gene_20054

  • right end position:
    • 723
  • transcription direction:
    • POSITIVE
  • left end position:
    • 8
  • centisome position:
    • 0.44469148
  • Synonym(s):
    • FNR

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_20054&oldid=46918"