Difference between revisions of "LYSDECARBOX-RXN"

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(Created page with "Category:Gene == Gene Tiso_gene_8669 == * right end position: ** 8938 * transcription direction: ** POSITIVE * left end position: ** 6109 * centisome position: ** 61.09610...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=LYSDECARBOX-RXN LYSDECARBOX-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.ex...")
 
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_8669 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=LYSDECARBOX-RXN LYSDECARBOX-RXN] ==
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* right end position:
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* direction:
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** 8938
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** LEFT-TO-RIGHT
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* transcription direction:
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* ec number:
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** POSITIVE
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** [http://enzyme.expasy.org/EC/4.1.1.18 EC-4.1.1.18]
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* left end position:
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** 6109
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* centisome position:
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** 61.096107   
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* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* Reaction: [[3.2.1.21-RXN]]
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* With identifiers:
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** Source: [[annotation-in-silico_annotation]]
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** 1 [[LYS]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CADAVERINE]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
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*** Assignment: ec-number
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* With common name(s):
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** Source: [[annotation-experimental_annotation]]
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** 1 L-lysine[c] '''+''' 1 H+[c] '''=>''' 1 cadaverine[c] '''+''' 1 CO2[c]
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*** Assignment: ec-number
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* Reaction: [[RXN-10769]]
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== Genes associated with this reaction  ==
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** Source: [[annotation-in-silico_annotation]]
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Genes have been associated with this reaction based on different elements listed below.
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*** Assignment: ec-number
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* Gene: [[Tiso_gene_10395]]
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** Source: [[annotation-experimental_annotation]]
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** Source: [[orthology-synechocystis]]
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*** Assignment: ec-number
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== Pathways  ==
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* Reaction: [[RXN-10773]]
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* [[PWY0-461]], L-lysine degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-461 PWY0-461]
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** Source: [[annotation-in-silico_annotation]]
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** '''1''' reactions found over '''1''' reactions in the full pathway
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*** Assignment: ec-number
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* [[PWY-5468]], lupanine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5468 PWY-5468]
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** Source: [[annotation-experimental_annotation]]
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** '''1''' reactions found over '''5''' reactions in the full pathway
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*** Assignment: ec-number
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* [[PWY-6381]], bisucaberin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6381 PWY-6381]
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* Reaction: [[RXN-13602]]
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** '''1''' reactions found over '''5''' reactions in the full pathway
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** Source: [[annotation-in-silico_annotation]]
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* [[PWY0-1303]], aminopropylcadaverine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1303 PWY0-1303]
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*** Assignment: ec-number
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** '''2''' reactions found over '''2''' reactions in the full pathway
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** Source: [[annotation-experimental_annotation]]
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* [[PWY-6328]], L-lysine degradation X: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6328 PWY-6328]
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*** Assignment: ec-number
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** '''1''' reactions found over '''6''' reactions in the full pathway
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* Reaction: [[RXN-13603]]
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* [[PWY-6375]], desferrioxamine E biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6375 PWY-6375]
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** Source: [[annotation-in-silico_annotation]]
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** '''1''' reactions found over '''5''' reactions in the full pathway
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*** Assignment: ec-number
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* [[PWY-6376]], desferrioxamine B biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6376 PWY-6376]
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** Source: [[annotation-experimental_annotation]]
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** '''1''' reactions found over '''5''' reactions in the full pathway
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*** Assignment: ec-number
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== Reconstruction information  ==
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* Reaction: [[RXN-14179]]
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* Category: [[orthology]]
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** Source: [[annotation-in-silico_annotation]]
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** Source: [[orthology-synechocystis]]
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*** Assignment: ec-number
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*** Tool: [[pantograph]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-5341]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-8036]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-9674]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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== Pathways associated ==
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* [[PWY-3121]]
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* [[PWY-6002]]
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* [[PWY-6788]]
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* [[PWY-5176]]
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* [[PWY-7092]]
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* [[PWY-7091]]
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== External links  ==
 
== External links  ==
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{{#set: right end position=8938}}
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* RHEA:
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{{#set: transcription direction=POSITIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22352 22352]
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{{#set: left end position=6109}}
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* LIGAND-RXN:
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{{#set: centisome position=61.096107    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R00462 R00462]
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{{#set: reaction associated=3.2.1.21-RXN|RXN-10769|RXN-10773|RXN-13602|RXN-13603|RXN-14179|RXN-5341|RXN-8036|RXN-9674}}
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* UNIPROT:
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{{#set: pathway associated=PWY-3121|PWY-6002|PWY-6788|PWY-5176|PWY-7092|PWY-7091}}
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** [http://www.uniprot.org/uniprot/P05033 P05033]
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** [http://www.uniprot.org/uniprot/P21885 P21885]
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** [http://www.uniprot.org/uniprot/P0A9H3 P0A9H3]
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** [http://www.uniprot.org/uniprot/P52095 P52095]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: ec number=EC-4.1.1.18}}
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{{#set: gene associated=Tiso_gene_10395}}
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{{#set: in pathway=PWY0-461|PWY-5468|PWY-6381|PWY0-1303|PWY-6328|PWY-6375|PWY-6376}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction source=orthology-synechocystis}}
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{{#set: reconstruction tool=pantograph}}

Latest revision as of 20:18, 21 March 2018

Reaction LYSDECARBOX-RXN

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY0-461, L-lysine degradation I: PWY0-461
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-5468, lupanine biosynthesis: PWY-5468
    • 1 reactions found over 5 reactions in the full pathway
  • PWY-6381, bisucaberin biosynthesis: PWY-6381
    • 1 reactions found over 5 reactions in the full pathway
  • PWY0-1303, aminopropylcadaverine biosynthesis: PWY0-1303
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-6328, L-lysine degradation X: PWY-6328
    • 1 reactions found over 6 reactions in the full pathway
  • PWY-6375, desferrioxamine E biosynthesis: PWY-6375
    • 1 reactions found over 5 reactions in the full pathway
  • PWY-6376, desferrioxamine B biosynthesis: PWY-6376
    • 1 reactions found over 5 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=LYSDECARBOX-RXN&oldid=47659"