Difference between revisions of "RXN-13443"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16030 RXN-16030] == * direction: ** REVERSIBLE * common name: ** mg&lt_sup&gt2+&lt_sup&gt-depen...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13443 RXN-13443] == * direction: ** LEFT-TO-RIGHT * common name: ** chloroplast_beta-keto_acyl_...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16030 RXN-16030] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13443 RXN-13443] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** mg&lt_sup&gt2+&lt_sup&gt-dependent_phosphatidate_phosphatase
+
** chloroplast_beta-keto_acyl_reductase
−
** nuclear_elongation_and_deformation_protein_1
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/3.1.3.4 EC-3.1.3.4]
+
** [http://enzyme.expasy.org/EC/1.1.1.330 EC-1.1.1.330]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[WATER]][c] '''+''' 1 [[CPD-17273]][c] '''<=>''' 1 [[CPD-17271]][c] '''+''' 1 [[Pi]][c]
+
** 1 [[CPD-14423]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[NADH-P-OR-NOP]][c] '''=>''' 1 [[NAD-P-OR-NOP]][c] '''+''' 1 [[CPD-14424]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H2O[c] '''+''' 1 1-stearoyl-2-palmitoyl-sn-glycerol 3-phosphate[c] '''<=>''' 1 1-stearoyl-2-palmitoyl-glycerol[c] '''+''' 1 phosphate[c]
+
** 1 3-oxo-docosapentaenoyl-CoA[c] '''+''' 1 H+[c] '''+''' 1 NAD(P)H[c] '''=>''' 1 NAD(P)+[c] '''+''' 1 (5Z,8Z,11Z,14Z,17Z)-3R-hydroxy-docosapentaenoyl-CoA[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[Tiso_gene_7386]]
+
* Gene: [[Tiso_gene_9871]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[Tiso_gene_5063]]
+
** Source: [[annotation-experimental_annotation]]
−
** Source: [[annotation-in-silico_annotation]]
+
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_13083]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_9885]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-7053]], docosahexaenoate biosynthesis I (lower eukaryotes): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7053 PWY-7053]
 +
** '''4''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7606]], docosahexaenoate biosynthesis III (6-desaturase, mammals): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7606 PWY-7606]
 +
** '''14''' reactions found over '''14''' reactions in the full pathway
 +
* [[PWY-7727]], docosahexaenoate biosynthesis IV (4-desaturase, mammals): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7727 PWY-7727]
 +
** '''5''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-experimental_annotation]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: direction=REVERSIBLE}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=mg&lt_sup&gt2+&lt_sup&gt-dependent_phosphatidate_phosphatase}}
+
{{#set: common name=chloroplast_beta-keto_acyl_reductase}}
−
{{#set: common name=nuclear_elongation_and_deformation_protein_1}}
+
{{#set: ec number=EC-1.1.1.330}}
−
{{#set: ec number=EC-3.1.3.4}}
+
{{#set: gene associated=Tiso_gene_9871|Tiso_gene_13083|Tiso_gene_9885}}
−
{{#set: gene associated=Tiso_gene_7386|Tiso_gene_5063}}
+
{{#set: in pathway=PWY-7053|PWY-7606|PWY-7727}}
−
{{#set: in pathway=}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
−
{{#set: reconstruction source=annotation-in-silico_annotation}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: reconstruction tool=pathwaytools}}
+

Latest revision as of 20:21, 21 March 2018

Reaction RXN-13443

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • chloroplast_beta-keto_acyl_reductase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 3-oxo-docosapentaenoyl-CoA[c] + 1 H+[c] + 1 NAD(P)H[c] => 1 NAD(P)+[c] + 1 (5Z,8Z,11Z,14Z,17Z)-3R-hydroxy-docosapentaenoyl-CoA[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7053, docosahexaenoate biosynthesis I (lower eukaryotes): PWY-7053
    • 4 reactions found over 7 reactions in the full pathway
  • PWY-7606, docosahexaenoate biosynthesis III (6-desaturase, mammals): PWY-7606
    • 14 reactions found over 14 reactions in the full pathway
  • PWY-7727, docosahexaenoate biosynthesis IV (4-desaturase, mammals): PWY-7727
    • 5 reactions found over 6 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-13443&oldid=48074"