Difference between revisions of "TRNA-Adenosines-37"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=MESO-DIAMINOPIMELATE MESO-DIAMINOPIMELATE] == * smiles: ** C(C(CCCC(C([O-])=O)[N+])[N+])([O-])=...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12610 RXN-12610] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** thiamine_monophospha...")
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=MESO-DIAMINOPIMELATE MESO-DIAMINOPIMELATE] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12610 RXN-12610] ==
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* smiles:
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* direction:
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** C(C(CCCC(C([O-])=O)[N+])[N+])([O-])=O
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** LEFT-TO-RIGHT
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* inchi key:
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** InChIKey=GMKMEZVLHJARHF-SYDPRGILSA-N
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* common name:
 
* common name:
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** meso-diaminopimelate
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** ORF
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* molecular weight:
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** thiamine_monophosphate_synthase
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** 190.199   
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* ec number:
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** [http://enzyme.expasy.org/EC/2.5.1.3 EC-2.5.1.3]
 
* Synonym(s):
 
* Synonym(s):
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** meso-2,6-diaminopimelate
 
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** meso-A2pm
 
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** meso-diaminoheptanedioate
 
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** meso-2,6-diaminoheptanedioate
 
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** meso-1-α,ε-diaminopimelate
 
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** D,L-diaminopimelate
 
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** D,L-DAP
 
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** D,L-meso-diaminoheptanedioate
 
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** M-DAP
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[DIAMINOPIMDECARB-RXN]]
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* With identifiers:
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== Reaction(s) known to produce the compound ==
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** 2 [[PROTON]][c] '''+''' 1 [[AMINO-HYDROXYMETHYL-METHYLPYRIMIDINE-PP]][c] '''+''' 1 [[CPD-13576]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[THIAMINE-P]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
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== Reaction(s) of unknown directionality ==
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* With common name(s):
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* [[DIAMINOPIMEPIM-RXN]]
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** 2 H+[c] '''+''' 1 4-amino-2-methyl-5-(diphosphomethyl)pyrimidine[c] '''+''' 1 2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate[c] '''=>''' 1 diphosphate[c] '''+''' 1 thiamine phosphate[c] '''+''' 1 CO2[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_2160]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_10320]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_2159]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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== Pathways  ==
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* [[PWY-6907]], thiamine diphosphate biosynthesis III (Staphylococcus): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6907 PWY-6907]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-6893]], thiamine diphosphate biosynthesis II (Bacillus): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6893 PWY-6893]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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== Reconstruction information  ==
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[in-silico_annotation]]
 
== External links  ==
 
== External links  ==
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* CAS : 922-54-3
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{{#set: direction=LEFT-TO-RIGHT}}
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* BIGG : 26dap__M
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{{#set: common name=ORF}}
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* PUBCHEM:
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{{#set: common name=thiamine_monophosphate_synthase}}
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=1549101 1549101]
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{{#set: ec number=EC-2.5.1.3}}
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* LIGAND-CPD:
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{{#set: gene associated=Tiso_gene_2160|Tiso_gene_10320|Tiso_gene_2159}}
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** [http://www.genome.jp/dbget-bin/www_bget?C00680 C00680]
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{{#set: in pathway=PWY-6907|PWY-6893}}
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* CHEBI:
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{{#set: reconstruction category=annotation}}
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=57791 57791]
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{{#set: reconstruction tool=pathwaytools}}
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* METABOLIGHTS : MTBLC57791
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{{#set: reconstruction source=in-silico_annotation}}
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{{#set: smiles=C(C(CCCC(C([O-])=O)[N+])[N+])([O-])=O}}
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{{#set: inchi key=InChIKey=GMKMEZVLHJARHF-SYDPRGILSA-N}}
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{{#set: common name=meso-diaminopimelate}}
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{{#set: molecular weight=190.199    }}
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{{#set: common name=meso-2,6-diaminopimelate|meso-A2pm|meso-diaminoheptanedioate|meso-2,6-diaminoheptanedioate|meso-1-α,ε-diaminopimelate|D,L-diaminopimelate|D,L-DAP|D,L-meso-diaminoheptanedioate|M-DAP}}
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{{#set: consumed by=DIAMINOPIMDECARB-RXN}}
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{{#set: consumed or produced by=DIAMINOPIMEPIM-RXN}}
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Revision as of 16:31, 10 January 2018

Reaction RXN-12610

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ORF
    • thiamine_monophosphate_synthase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6907, thiamine diphosphate biosynthesis III (Staphylococcus): PWY-6907
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-6893, thiamine diphosphate biosynthesis II (Bacillus): PWY-6893
    • 1 reactions found over 2 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=TRNA-Adenosines-37&oldid=13347"