Difference between revisions of "ACONITATEDEHYDR-RXN"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1G-193 RXN1G-193] == * direction: ** LEFT-TO-RIGHT * common name: ** trans-delta2-cis,cis-5,17-C...") |
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACONITATEDEHYDR-RXN ACONITATEDEHYDR-RXN] == * direction: ** REVERSIBLE * Synonym(s): == Reaction F...") |
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[[Category:Reaction]] | [[Category:Reaction]] | ||
− | == Reaction [http://metacyc.org/META/NEW-IMAGE?object= | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACONITATEDEHYDR-RXN ACONITATEDEHYDR-RXN] == |
* direction: | * direction: | ||
− | ** | + | ** REVERSIBLE |
− | + | ||
− | + | ||
− | + | ||
− | + | ||
* Synonym(s): | * Synonym(s): | ||
== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
− | ** 1 [[ | + | ** 1 [[CIT]][c] '''<=>''' 1 [[CIS-ACONITATE]][c] '''+''' 1 [[WATER]][c] |
* With common name(s): | * With common name(s): | ||
− | ** 1 | + | ** 1 citrate[c] '''<=>''' 1 cis-aconitate[c] '''+''' 1 H2O[c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
Genes have been associated with this reaction based on different elements listed below. | Genes have been associated with this reaction based on different elements listed below. | ||
− | * Gene: [[ | + | * Gene: [[Tiso_gene_13007]] |
− | ** Source: [[orthology- | + | ** Source: [[annotation-experimental_annotation]] |
+ | *** Assignment: EC-NUMBER | ||
+ | ** Source: [[orthology-synechocystis]] | ||
== Pathways == | == Pathways == | ||
− | * [[ | + | * [[PWY-5750]], itaconate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5750 PWY-5750] |
− | ** ''' | + | ** '''3''' reactions found over '''4''' reactions in the full pathway |
+ | * [[PWY-5913]], partial TCA cycle (obligate autotrophs): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5913 PWY-5913] | ||
+ | ** '''9''' reactions found over '''11''' reactions in the full pathway | ||
+ | * [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6969 PWY-6969] | ||
+ | ** '''9''' reactions found over '''12''' reactions in the full pathway | ||
+ | * [[PWY-6549]], L-glutamine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6549 PWY-6549] | ||
+ | ** '''6''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-5392]], reductive TCA cycle II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5392 PWY-5392] | ||
+ | ** '''5''' reactions found over '''12''' reactions in the full pathway | ||
+ | * [[TCA]], TCA cycle I (prokaryotic): [http://metacyc.org/META/NEW-IMAGE?object=TCA TCA] | ||
+ | ** '''7''' reactions found over '''10''' reactions in the full pathway | ||
+ | * [[P23-PWY]], reductive TCA cycle I: [http://metacyc.org/META/NEW-IMAGE?object=P23-PWY P23-PWY] | ||
+ | ** '''7''' reactions found over '''12''' reactions in the full pathway | ||
+ | * [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase): [http://metacyc.org/META/NEW-IMAGE?object=P105-PWY P105-PWY] | ||
+ | ** '''9''' reactions found over '''11''' reactions in the full pathway | ||
+ | * [[GLYOXYLATE-BYPASS]], glyoxylate cycle: [http://metacyc.org/META/NEW-IMAGE?object=GLYOXYLATE-BYPASS GLYOXYLATE-BYPASS] | ||
+ | ** '''6''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[FERMENTATION-PWY]], mixed acid fermentation: [http://metacyc.org/META/NEW-IMAGE?object=FERMENTATION-PWY FERMENTATION-PWY] | ||
+ | ** '''9''' reactions found over '''16''' reactions in the full pathway | ||
+ | * [[PWY-6728]], methylaspartate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6728 PWY-6728] | ||
+ | ** '''11''' reactions found over '''18''' reactions in the full pathway | ||
+ | * [[REDCITCYC]], TCA cycle VIII (helicobacter): [http://metacyc.org/META/NEW-IMAGE?object=REDCITCYC REDCITCYC] | ||
+ | ** '''6''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-7254]], TCA cycle VII (acetate-producers): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7254 PWY-7254] | ||
+ | ** '''5''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-7124]], ethylene biosynthesis V (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7124 PWY-7124] | ||
+ | ** '''7''' reactions found over '''10''' reactions in the full pathway | ||
+ | * [[PWY66-398]], TCA cycle III (animals): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-398 PWY66-398] | ||
+ | ** '''10''' reactions found over '''11''' reactions in the full pathway | ||
+ | * [[PWY-5690]], TCA cycle II (plants and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5690 PWY-5690] | ||
+ | ** '''6''' reactions found over '''9''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
* Category: [[orthology]] | * Category: [[orthology]] | ||
− | ** Source: [[orthology- | + | ** Source: [[orthology-synechocystis]] |
*** Tool: [[pantograph]] | *** Tool: [[pantograph]] | ||
+ | * Category: [[annotation]] | ||
+ | ** Source: [[annotation-in-silico_annotation]] | ||
+ | *** Tool: [[pathwaytools]] | ||
+ | ** Source: [[annotation-experimental_annotation]] | ||
+ | *** Tool: [[pathwaytools]] | ||
== External links == | == External links == | ||
− | + | * RHEA: | |
− | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10228 10228] | |
− | + | * PIR: | |
− | {{#set: gene associated= | + | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A35544 A35544] |
− | {{#set: in pathway= | + | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A44153 A44153] |
− | {{#set: reconstruction category=orthology}} | + | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A44154 A44154] |
− | {{#set: reconstruction source=orthology- | + | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A47184 A47184] |
− | {{#set: reconstruction tool=pantograph}} | + | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A81801 A81801] |
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B48642 B48642] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C64362 C64362] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C64617 C64617] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C81356 C81356] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=F64734 F64734] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=F70873 F70873] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G64875 G64875] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G69599 G69599] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G86708 G86708] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H81775 H81775] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S17526 S17526] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S18720 S18720] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S26403 S26403] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S49849 S49849] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S50387 S50387] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S57528 S57528] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S57805 S57805] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S76777 S76777] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04693 T04693] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04820 T04820] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07611 T07611] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T10101 T10101] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T52543 T52543] | ||
+ | * LIGAND-RXN: | ||
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R01325 R01325] | ||
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/P16276 P16276] | ||
+ | ** [http://www.uniprot.org/uniprot/Q01059 Q01059] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9TSA1 Q9TSA1] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JTI5 Q9JTI5] | ||
+ | ** [http://www.uniprot.org/uniprot/P37032 P37032] | ||
+ | ** [http://www.uniprot.org/uniprot/P81291 P81291] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PP88 Q9PP88] | ||
+ | ** [http://www.uniprot.org/uniprot/P36683 P36683] | ||
+ | ** [http://www.uniprot.org/uniprot/O53166 O53166] | ||
+ | ** [http://www.uniprot.org/uniprot/P25516 P25516] | ||
+ | ** [http://www.uniprot.org/uniprot/P09339 P09339] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9CHQ5 Q9CHQ5] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JT05 Q9JT05] | ||
+ | ** [http://www.uniprot.org/uniprot/Q99798 Q99798] | ||
+ | ** [http://www.uniprot.org/uniprot/P28271 P28271] | ||
+ | ** [http://www.uniprot.org/uniprot/P21399 P21399] | ||
+ | ** [http://www.uniprot.org/uniprot/Q42669 Q42669] | ||
+ | ** [http://www.uniprot.org/uniprot/P19414 P19414] | ||
+ | ** [http://www.uniprot.org/uniprot/P20004 P20004] | ||
+ | ** [http://www.uniprot.org/uniprot/P49609 P49609] | ||
+ | ** [http://www.uniprot.org/uniprot/P74582 P74582] | ||
+ | ** [http://www.uniprot.org/uniprot/Q42560 Q42560] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9SZ36 Q9SZ36] | ||
+ | ** [http://www.uniprot.org/uniprot/O04916 O04916] | ||
+ | {{#set: direction=REVERSIBLE}} | ||
+ | {{#set: gene associated=Tiso_gene_13007}} | ||
+ | {{#set: in pathway=PWY-5750|PWY-5913|PWY-6969|PWY-6549|PWY-5392|TCA|P23-PWY|P105-PWY|GLYOXYLATE-BYPASS|FERMENTATION-PWY|PWY-6728|REDCITCYC|PWY-7254|PWY-7124|PWY66-398|PWY-5690}} | ||
+ | {{#set: reconstruction category=orthology|annotation}} | ||
+ | {{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-synechocystis}} | ||
+ | {{#set: reconstruction tool=pantograph|pathwaytools}} |
Latest revision as of 20:24, 21 March 2018
Contents
Reaction ACONITATEDEHYDR-RXN
- direction:
- REVERSIBLE
- Synonym(s):
Reaction Formula
- With identifiers:
- 1 CIT[c] <=> 1 CIS-ACONITATE[c] + 1 WATER[c]
- With common name(s):
- 1 citrate[c] <=> 1 cis-aconitate[c] + 1 H2O[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: Tiso_gene_13007
- Source: annotation-experimental_annotation
- Assignment: EC-NUMBER
- Source: orthology-synechocystis
- Source: annotation-experimental_annotation
Pathways
- PWY-5750, itaconate biosynthesis: PWY-5750
- 3 reactions found over 4 reactions in the full pathway
- PWY-5913, partial TCA cycle (obligate autotrophs): PWY-5913
- 9 reactions found over 11 reactions in the full pathway
- PWY-6969, TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): PWY-6969
- 9 reactions found over 12 reactions in the full pathway
- PWY-6549, L-glutamine biosynthesis III: PWY-6549
- 6 reactions found over 9 reactions in the full pathway
- PWY-5392, reductive TCA cycle II: PWY-5392
- 5 reactions found over 12 reactions in the full pathway
- TCA, TCA cycle I (prokaryotic): TCA
- 7 reactions found over 10 reactions in the full pathway
- P23-PWY, reductive TCA cycle I: P23-PWY
- 7 reactions found over 12 reactions in the full pathway
- P105-PWY, TCA cycle IV (2-oxoglutarate decarboxylase): P105-PWY
- 9 reactions found over 11 reactions in the full pathway
- GLYOXYLATE-BYPASS, glyoxylate cycle: GLYOXYLATE-BYPASS
- 6 reactions found over 6 reactions in the full pathway
- FERMENTATION-PWY, mixed acid fermentation: FERMENTATION-PWY
- 9 reactions found over 16 reactions in the full pathway
- PWY-6728, methylaspartate cycle: PWY-6728
- 11 reactions found over 18 reactions in the full pathway
- REDCITCYC, TCA cycle VIII (helicobacter): REDCITCYC
- 6 reactions found over 9 reactions in the full pathway
- PWY-7254, TCA cycle VII (acetate-producers): PWY-7254
- 5 reactions found over 9 reactions in the full pathway
- PWY-7124, ethylene biosynthesis V (engineered): PWY-7124
- 7 reactions found over 10 reactions in the full pathway
- PWY66-398, TCA cycle III (animals): PWY66-398
- 10 reactions found over 11 reactions in the full pathway
- PWY-5690, TCA cycle II (plants and fungi): PWY-5690
- 6 reactions found over 9 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-synechocystis
- Tool: pantograph
- Source: orthology-synechocystis
- Category: annotation
- Source: annotation-in-silico_annotation
- Tool: pathwaytools
- Source: annotation-experimental_annotation
- Tool: pathwaytools
- Source: annotation-in-silico_annotation
External links
- RHEA:
- PIR:
- LIGAND-RXN:
- UNIPROT: