Difference between revisions of "RXN-9653"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Gene == Gene Tiso_gene_8387 == * right end position: ** 2571 * transcription direction: ** POSITIVE * left end position: ** 383 * centisome position: ** 3.719169...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9653 RXN-9653] == * direction: ** LEFT-TO-RIGHT * common name: ** polyketide_synthase ** 3-oxoa...")
 
Line 1: Line 1:
−
[[Category:Gene]]
+
[[Category:Reaction]]
−
== Gene Tiso_gene_8387 ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9653 RXN-9653] ==
−
* right end position:
+
* direction:
−
** 2571
+
** LEFT-TO-RIGHT
−
* transcription direction:
+
* common name:
−
** POSITIVE
+
** polyketide_synthase
−
* left end position:
+
** 3-oxoacyl-synthase
−
** 383
+
* ec number:
−
* centisome position:
+
** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
−
** 3.719169   
+
** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
 +
** [http://enzyme.expasy.org/EC/2.3.1.41 EC-2.3.1.41]
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reactions associated ==
+
== Reaction Formula ==
−
* Reaction: [[2.4.1.142-RXN]]
+
* With identifiers:
 +
** 1 [[MALONYL-COA]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Dodecanoyl-ACPs]][c] '''=>''' 1 [[3-oxo-myristoyl-ACPs]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
 +
* With common name(s):
 +
** 1 malonyl-CoA[c] '''+''' 1 H+[c] '''+''' 1 a dodecanoyl-[acp][c] '''=>''' 1 a 3-oxo-myristoyl-[acp][c] '''+''' 1 coenzyme A[c] '''+''' 1 CO2[c]
 +
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[Tiso_gene_13394]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
−
*** Assignment: ec-number
+
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_10876]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_500]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_135]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_5939]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_15991]]
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
−
== Pathways associated ==
+
* Gene: [[Tiso_gene_19302]]
−
* [[MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS]]
+
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_14485]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_136]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
== Pathways ==
 +
* [[PWY-5994]], palmitate biosynthesis I (animals and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5994 PWY-5994]
 +
** '''31''' reactions found over '''31''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: right end position=2571}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: transcription direction=POSITIVE}}
+
{{#set: common name=polyketide_synthase}}
−
{{#set: left end position=383}}
+
{{#set: common name=3-oxoacyl-synthase}}
−
{{#set: centisome position=3.719169    }}
+
{{#set: ec number=EC-2.3.1.86}}
−
{{#set: reaction associated=2.4.1.142-RXN}}
+
{{#set: ec number=EC-2.3.1.85}}
−
{{#set: pathway associated=MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS}}
+
{{#set: ec number=EC-2.3.1.41}}
 +
{{#set: gene associated=Tiso_gene_13394|Tiso_gene_10876|Tiso_gene_500|Tiso_gene_135|Tiso_gene_5939|Tiso_gene_15991|Tiso_gene_19302|Tiso_gene_14485|Tiso_gene_136}}
 +
{{#set: in pathway=PWY-5994}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:25, 21 March 2018

Reaction RXN-9653

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5994, palmitate biosynthesis I (animals and fungi): PWY-5994
    • 31 reactions found over 31 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-9653&oldid=48567"