Difference between revisions of "HEMN-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-15139 RXN-15139] == * direction: ** LEFT-TO-RIGHT * Synonym(s): == Reaction Formula == * With...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=HEMN-RXN HEMN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** coproporphyrinogen-iii_oxidas...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-15139 RXN-15139] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=HEMN-RXN HEMN-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 +
* common name:
 +
** coproporphyrinogen-iii_oxidase
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/1.3.98.3 EC-1.3.98.3]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[ADENINE]][c] '''+''' 2 [[CPD-12377]][c] '''=>''' 1 [[WATER]][c] '''+''' 1 [[CPD0-2461]][c]
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** 2 [[S-ADENOSYLMETHIONINE]][c] '''+''' 1 [[COPROPORPHYRINOGEN_III]][c] '''=>''' 2 [[CARBON-DIOXIDE]][c] '''+''' 2 [[CH33ADO]][c] '''+''' 2 [[MET]][c] '''+''' 1 [[PROTOPORPHYRINOGEN]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 adenine[c] '''+''' 2 hydroxyl radical[c] '''=>''' 1 H2O[c] '''+''' 1 isoguanine[c]
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** 2 S-adenosyl-L-methionine[c] '''+''' 1 coproporphyrinogen III[c] '''=>''' 2 CO2[c] '''+''' 2 5'-deoxyadenosine[c] '''+''' 2 L-methionine[c] '''+''' 1 protoporphyrinogen IX[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[Tiso_gene_5577]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_18066]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_13365]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-synechocystis]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_13364]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-synechocystis]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_4004]]
 +
** Source: [[orthology-esiliculosus]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-5531]], 3,8-divinyl-chlorophyllide a biosynthesis II (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5531 PWY-5531]
 +
** '''4''' reactions found over '''9''' reactions in the full pathway
 +
* [[HEMESYN2-PWY]], heme biosynthesis II (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=HEMESYN2-PWY HEMESYN2-PWY]
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-athaliana]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-synechocystis]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15425 15425]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R06895 R06895]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: in pathway=}}
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{{#set: common name=coproporphyrinogen-iii_oxidase}}
−
{{#set: reconstruction category=annotation}}
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{{#set: ec number=EC-1.3.98.3}}
−
{{#set: reconstruction source=annotation-in-silico_annotation}}
+
{{#set: gene associated=Tiso_gene_5577|Tiso_gene_18066|Tiso_gene_13365|Tiso_gene_13364|Tiso_gene_4004}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: in pathway=PWY-5531|HEMESYN2-PWY}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=orthology-athaliana|annotation-in-silico_annotation|orthology-synechocystis|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:25, 21 March 2018

Reaction HEMN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • coproporphyrinogen-iii_oxidase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5531, 3,8-divinyl-chlorophyllide a biosynthesis II (anaerobic): PWY-5531
    • 4 reactions found over 9 reactions in the full pathway
  • HEMESYN2-PWY, heme biosynthesis II (anaerobic): HEMESYN2-PWY
    • 3 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=HEMN-RXN&oldid=48643"