Difference between revisions of "AAL fum"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GDPREDUCT-RXN GDPREDUCT-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ribonucleoside-diph...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=AAL_fum AAL_fum] == * direction: ** LEFT-TO-RIGHT * common name: ** N6-(1,2-dicarboxyethyl)AMP AMP-...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GDPREDUCT-RXN GDPREDUCT-RXN] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=AAL_fum AAL_fum] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** ribonucleoside-diphosphate_reductase
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** N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming)
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* ec number:
+
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** [http://enzyme.expasy.org/EC/1.17.4.1 EC-1.17.4.1]
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* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[Red-Thioredoxin]][c] '''+''' 1 [[GDP]][c] '''=>''' 1 [[WATER]][c] '''+''' 1 [[DGDP]][c] '''+''' 1 [[Ox-Thioredoxin]][c]
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** 1.0 [[ADENYLOSUCC]][c] '''=>''' 1.0 [[AMP]][c] '''+''' 1.0 [[FUM]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 a reduced thioredoxin[c] '''+''' 1 GDP[c] '''=>''' 1 H2O[c] '''+''' 1 dGDP[c] '''+''' 1 an oxidized thioredoxin[c]
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** 1.0 adenylo-succinate[c] '''=>''' 1.0 AMP[c] '''+''' 1.0 fumarate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[Tiso_gene_10138]]
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* Gene: [[Tiso_gene_6720]]
−
** Source: [[orthology-athaliana]]
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** Source: [[orthology-creinhardtii]]
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** Source: [[orthology-synechocystis]]
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−
** Source: [[orthology-esiliculosus]]
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−
* Gene: [[Tiso_gene_10617]]
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−
** Source: [[annotation-experimental_annotation]]
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−
*** Assignment: EC-NUMBER
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−
** Source: [[orthology-athaliana]]
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−
** Source: [[orthology-synechocystis]]
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−
** Source: [[orthology-esiliculosus]]
+
−
* Gene: [[Tiso_gene_9916]]
+
−
** Source: [[annotation-in-silico_annotation]]
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−
*** Assignment: EC-NUMBER
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−
** Source: [[orthology-athaliana]]
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−
** Source: [[orthology-synechocystis]]
+
−
** Source: [[orthology-esiliculosus]]
+
−
* Gene: [[Tiso_gene_9915]]
+
−
** Source: [[annotation-experimental_annotation]]
+
−
*** Assignment: EC-NUMBER
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7222]], guanosine deoxyribonucleotides de novo biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7222 PWY-7222]
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-7226]], guanosine deoxyribonucleotides de novo biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7226 PWY-7226]
 
−
** '''2''' reactions found over '''2''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
−
** Source: [[orthology-athaliana]]
+
** Source: [[orthology-creinhardtii]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
−
** Source: [[orthology-synechocystis]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-esiliculosus]]
 
−
*** Tool: [[pantograph]]
 
−
* Category: [[manual]]
 
−
** Source: [[manual-primary_network]]
 
−
* Category: [[annotation]]
 
−
** Source: [[annotation-in-silico_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
−
** Source: [[annotation-experimental_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28030 28030]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R02019 R02019]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=ribonucleoside-diphosphate_reductase}}
+
{{#set: common name=N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming)}}
−
{{#set: ec number=EC-1.17.4.1}}
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{{#set: gene associated=Tiso_gene_6720}}
−
{{#set: gene associated=Tiso_gene_10138|Tiso_gene_10617|Tiso_gene_9916|Tiso_gene_9915}}
+
{{#set: in pathway=}}
−
{{#set: in pathway=PWY-7222|PWY-7226}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction category=orthology|manual|annotation}}
+
{{#set: reconstruction source=orthology-creinhardtii}}
−
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network}}
+
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 20:25, 21 March 2018

Reaction AAL_fum

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming)
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 adenylo-succinate[c] => 1.0 AMP[c] + 1.0 fumarate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=AAL_fum&oldid=48657"