Difference between revisions of "CPD-19161"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACP-S-ACETYLTRANSFER-RXN ACP-S-ACETYLTRANSFER-RXN] == * direction: ** REVERSIBLE * common name: **...")
 
(Created page with "Category:Gene == Gene Tiso_gene_9922 == * left end position: ** 4457 * transcription direction: ** NEGATIVE * right end position: ** 6446 * centisome position: ** 49.67123...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACP-S-ACETYLTRANSFER-RXN ACP-S-ACETYLTRANSFER-RXN] ==
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== Gene Tiso_gene_9922 ==
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* direction:
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* left end position:
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** REVERSIBLE
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** 4457
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* common name:
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* transcription direction:
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** polyketide_synthase
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** NEGATIVE
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* ec number:
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* right end position:
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** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
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** 6446
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** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
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* centisome position:
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** [http://enzyme.expasy.org/EC/2.3.1.38 EC-2.3.1.38]
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** 49.671234   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* [[3PGAREARR-RXN]]
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** 1 [[ACP]][c] '''+''' 1 [[ACETYL-COA]][c] '''<=>''' 1 [[ACETYL-ACP]][c] '''+''' 1 [[CO-A]][c]
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** in-silico_annotation
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* With common name(s):
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***ec-number
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** 1 a holo-[acyl-carrier protein][c] '''+''' 1 acetyl-CoA[c] '''<=>''' 1 an acetyl-[acp][c] '''+''' 1 coenzyme A[c]
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* [[RXN-15509]]
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** in-silico_annotation
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== Genes associated with this reaction  ==
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***ec-number
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Genes have been associated with this reaction based on different elements listed below.
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* [[RXN-15510]]
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* [[Tiso_gene_13394]]
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** in-silico_annotation
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** IN-SILICO_ANNOTATION
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***ec-number
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***EC-NUMBER
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* [[RXN-15511]]
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* [[Tiso_gene_15991]]
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** in-silico_annotation
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** [[pantograph]]-[[athaliana]]
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***ec-number
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** [[pantograph]]-[[athaliana]]
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* [[RXN-15512]]
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** [[pantograph]]-[[synechocystis]]
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** in-silico_annotation
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* [[Tiso_gene_10876]]
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***ec-number
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** IN-SILICO_ANNOTATION
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* [[RXN-15513]]
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***EC-NUMBER
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** in-silico_annotation
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* [[Tiso_gene_136]]
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***ec-number
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** IN-SILICO_ANNOTATION
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== Pathways associated ==
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***EC-NUMBER
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* [[PWY-1042]]
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* [[Tiso_gene_500]]
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* [[P341-PWY]]
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** IN-SILICO_ANNOTATION
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* [[PWY-2221]]
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***EC-NUMBER
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* [[PWY-1622]]
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* [[Tiso_gene_135]]
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* [[GLUCONEO-PWY]]
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** IN-SILICO_ANNOTATION
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* [[GLYCOLYSIS]]
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***EC-NUMBER
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* [[PWY-6901]]
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== Pathways ==
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* [[ANAGLYCOLYSIS-PWY]]
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* [[PWY-5966]], fatty acid biosynthesis initiation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5966 PWY-5966]
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* [[PWY-7218]]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-6405]]
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* [[FASYN-INITIAL-PWY]], superpathway of fatty acid biosynthesis initiation (E. coli): [http://metacyc.org/META/NEW-IMAGE?object=FASYN-INITIAL-PWY FASYN-INITIAL-PWY]
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* [[P124-PWY]]
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** '''5''' reactions found over '''8''' reactions in the full pathway
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* [[PWY-6886]]
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== Reconstruction information  ==
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* [[PWY66-399]]
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* [[orthology]]:
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* [[PWY-5723]]
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** [[pantograph]]:
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* [[PWY-6142]]
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*** [[synechocystis]]
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* [[PWY-5484]]
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*** [[athaliana]]
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* [[PWY-7124]]
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* [[manual]]:
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* [[P122-PWY]]
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** [[primary_network]]
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* [[PWY-7003]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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{{#set: left end position=4457}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01624 R01624]
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{{#set: transcription direction=NEGATIVE}}
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* UNIPROT:
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{{#set: right end position=6446}}
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** [http://www.uniprot.org/uniprot/P49327 P49327]
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{{#set: centisome position=49.671234    }}
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** [http://www.uniprot.org/uniprot/P08757 P08757]
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{{#set: reaction associated=3PGAREARR-RXN|RXN-15509|RXN-15510|RXN-15511|RXN-15512|RXN-15513}}
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** [http://www.uniprot.org/uniprot/P07149 P07149]
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{{#set: pathway associated=PWY-1042|P341-PWY|PWY-2221|PWY-1622|GLUCONEO-PWY|GLYCOLYSIS|PWY-6901|ANAGLYCOLYSIS-PWY|PWY-7218|PWY-6405|P124-PWY|PWY-6886|PWY66-399|PWY-5723|PWY-6142|PWY-5484|PWY-7124|P122-PWY|PWY-7003}}
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** [http://www.uniprot.org/uniprot/P12276 P12276]
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** [http://www.uniprot.org/uniprot/P12785 P12785]
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=polyketide_synthase}}
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{{#set: ec number=EC-2.3.1.86}}
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{{#set: ec number=EC-2.3.1.85}}
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{{#set: ec number=EC-2.3.1.38}}
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{{#set: gene associated=Tiso_gene_13394|Tiso_gene_15991|Tiso_gene_10876|Tiso_gene_136|Tiso_gene_500|Tiso_gene_135}}
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{{#set: in pathway=PWY-5966|FASYN-INITIAL-PWY}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=synechocystis|athaliana}}
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{{#set: reconstruction category=manual}}
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{{#set: reconstruction source=primary_network}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=in-silico_annotation}}
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Revision as of 16:32, 10 January 2018

Gene Tiso_gene_9922

  • left end position:
    • 4457
  • transcription direction:
    • NEGATIVE
  • right end position:
    • 6446
  • centisome position:
    • 49.671234
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=CPD-19161&oldid=13409"