Difference between revisions of "PWY-7091"
From metabolic_network
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=GlcA-GlcNAc-GlcA-Gal-Gal-Xyl-Protein GlcA-GlcNAc-GlcA-Gal-Gal-Xyl-Protein] == * common name: **...") |
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=FUMHYDR-RXN FUMHYDR-RXN] == * direction: ** REVERSIBLE * common name: ** pol-related * ec number: *...") |
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− | [[Category: | + | [[Category:Reaction]] |
− | == | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=FUMHYDR-RXN FUMHYDR-RXN] == |
+ | * direction: | ||
+ | ** REVERSIBLE | ||
* common name: | * common name: | ||
− | ** | + | ** pol-related |
+ | * ec number: | ||
+ | ** [http://enzyme.expasy.org/EC/4.2.1.2 EC-4.2.1.2] | ||
* Synonym(s): | * Synonym(s): | ||
− | ** | + | ** fumarate hydration |
− | ** | + | ** malate dehydration |
− | + | ||
− | == Reaction(s) | + | == Reaction Formula == |
− | * [[ | + | * With identifiers: |
− | == | + | ** 1 [[MAL]][c] '''<=>''' 1 [[FUM]][c] '''+''' 1 [[WATER]][c] |
− | * [[ | + | * With common name(s): |
− | == | + | ** 1 (S)-malate[c] '''<=>''' 1 fumarate[c] '''+''' 1 H2O[c] |
+ | |||
+ | == Genes associated with this reaction == | ||
+ | Genes have been associated with this reaction based on different elements listed below. | ||
+ | * [[Tiso_gene_6720]] | ||
+ | ** [[pantograph]]-[[athaliana]] | ||
+ | ** [[pantograph]]-[[creinhardtii]] | ||
+ | * [[Tiso_gene_3691]] | ||
+ | ** IN-SILICO_ANNOTATION | ||
+ | ***EC-NUMBER | ||
+ | ** EXPERIMENTAL_ANNOTATION | ||
+ | ***EC-NUMBER | ||
+ | ** [[pantograph]]-[[esiliculosus]] | ||
+ | ** [[pantograph]]-[[creinhardtii]] | ||
+ | == Pathways == | ||
+ | * [[PWY-561]], superpathway of glyoxylate cycle and fatty acid degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-561 PWY-561] | ||
+ | ** '''5''' reactions found over '''8''' reactions in the full pathway | ||
+ | * [[PWY-5913]], partial TCA cycle (obligate autotrophs): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5913 PWY-5913] | ||
+ | ** '''9''' reactions found over '''11''' reactions in the full pathway | ||
+ | * [[P42-PWY]], incomplete reductive TCA cycle: [http://metacyc.org/META/NEW-IMAGE?object=P42-PWY P42-PWY] | ||
+ | ** '''4''' reactions found over '''7''' reactions in the full pathway | ||
+ | * [[PWY-7384]], anaerobic energy metabolism (invertebrates, mitochondrial): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7384 PWY-7384] | ||
+ | ** '''7''' reactions found over '''12''' reactions in the full pathway | ||
+ | * [[PWY-5392]], reductive TCA cycle II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5392 PWY-5392] | ||
+ | ** '''5''' reactions found over '''12''' reactions in the full pathway | ||
+ | * [[P23-PWY]], reductive TCA cycle I: [http://metacyc.org/META/NEW-IMAGE?object=P23-PWY P23-PWY] | ||
+ | ** '''7''' reactions found over '''12''' reactions in the full pathway | ||
+ | * [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase): [http://metacyc.org/META/NEW-IMAGE?object=P105-PWY P105-PWY] | ||
+ | ** '''9''' reactions found over '''11''' reactions in the full pathway | ||
+ | * [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6969 PWY-6969] | ||
+ | ** '''9''' reactions found over '''12''' reactions in the full pathway | ||
+ | * [[FERMENTATION-PWY]], mixed acid fermentation: [http://metacyc.org/META/NEW-IMAGE?object=FERMENTATION-PWY FERMENTATION-PWY] | ||
+ | ** '''9''' reactions found over '''16''' reactions in the full pathway | ||
+ | * [[PWY-6728]], methylaspartate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6728 PWY-6728] | ||
+ | ** '''11''' reactions found over '''18''' reactions in the full pathway | ||
+ | * [[REDCITCYC]], TCA cycle VIII (helicobacter): [http://metacyc.org/META/NEW-IMAGE?object=REDCITCYC REDCITCYC] | ||
+ | ** '''6''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-7254]], TCA cycle VII (acetate-producers): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7254 PWY-7254] | ||
+ | ** '''5''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[P108-PWY]], pyruvate fermentation to propanoate I: [http://metacyc.org/META/NEW-IMAGE?object=P108-PWY P108-PWY] | ||
+ | ** '''3''' reactions found over '''7''' reactions in the full pathway | ||
+ | * [[TCA]], TCA cycle I (prokaryotic): [http://metacyc.org/META/NEW-IMAGE?object=TCA TCA] | ||
+ | ** '''7''' reactions found over '''10''' reactions in the full pathway | ||
+ | * [[PWY66-398]], TCA cycle III (animals): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-398 PWY66-398] | ||
+ | ** '''10''' reactions found over '''11''' reactions in the full pathway | ||
+ | * [[PWY-5690]], TCA cycle II (plants and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5690 PWY-5690] | ||
+ | ** '''6''' reactions found over '''9''' reactions in the full pathway | ||
+ | == Reconstruction information == | ||
+ | * [[orthology]]: | ||
+ | ** [[pantograph]]: | ||
+ | *** [[creinhardtii]] | ||
+ | *** [[athaliana]] | ||
+ | *** [[esiliculosus]] | ||
+ | * [[manual]]: | ||
+ | ** [[primary_network]] | ||
+ | * [[annotation]]: | ||
+ | ** [[pathwaytools]]: | ||
+ | *** [[experimental_annotation]] | ||
+ | *** [[in-silico_annotation]] | ||
== External links == | == External links == | ||
− | + | * RHEA: | |
− | {{#set: common name= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12460 12460] |
− | {{#set: | + | * PIR: |
− | {{#set: | + | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A47692 A47692] |
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A49760 A49760] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A64377 A64377] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A81281 A81281] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A81807 A81807] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B44511 B44511] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B81862 B81862] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=E64461 E64461] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=E64685 E64685] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H70896 H70896] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H71462 H71462] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JC4293 JC4293] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JC4982 JC4982] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=PA0062 PA0062] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S40448 S40448] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S76348 S76348] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T00433 T00433] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07374 T07374] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T41265 T41265] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T43727 T43727] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T45269 T45269] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=UFBSC8 UFBSC8] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=UFBYM UFBYM] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=UFEC UFEC] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=UFECAQ UFECAQ] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=UFHUM UFHUM] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=UFPG UFPG] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=UFRT UFRT] | ||
+ | * LIGAND-RXN: | ||
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R01082 R01082] | ||
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/Q04718 Q04718] | ||
+ | ** [http://www.uniprot.org/uniprot/Q58034 Q58034] | ||
+ | ** [http://www.uniprot.org/uniprot/O69294 O69294] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JTE3 Q9JTE3] | ||
+ | ** [http://www.uniprot.org/uniprot/P14407 P14407] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JTR0 Q9JTR0] | ||
+ | ** [http://www.uniprot.org/uniprot/Q58690 Q58690] | ||
+ | ** [http://www.uniprot.org/uniprot/O25883 O25883] | ||
+ | ** [http://www.uniprot.org/uniprot/O53446 O53446] | ||
+ | ** [http://www.uniprot.org/uniprot/O84863 O84863] | ||
+ | ** [http://www.uniprot.org/uniprot/Q51404 Q51404] | ||
+ | ** [http://www.uniprot.org/uniprot/Q7M4Z3 Q7M4Z3] | ||
+ | ** [http://www.uniprot.org/uniprot/P39461 P39461] | ||
+ | ** [http://www.uniprot.org/uniprot/Q55674 Q55674] | ||
+ | ** [http://www.uniprot.org/uniprot/P93033 P93033] | ||
+ | ** [http://www.uniprot.org/uniprot/Q43180 Q43180] | ||
+ | ** [http://www.uniprot.org/uniprot/O94552 O94552] | ||
+ | ** [http://www.uniprot.org/uniprot/O66271 O66271] | ||
+ | ** [http://www.uniprot.org/uniprot/Q60022 Q60022] | ||
+ | ** [http://www.uniprot.org/uniprot/P07343 P07343] | ||
+ | ** [http://www.uniprot.org/uniprot/P08417 P08417] | ||
+ | ** [http://www.uniprot.org/uniprot/P05042 P05042] | ||
+ | ** [http://www.uniprot.org/uniprot/P0AC33 P0AC33] | ||
+ | ** [http://www.uniprot.org/uniprot/P10173 P10173] | ||
+ | ** [http://www.uniprot.org/uniprot/P14408 P14408] | ||
+ | {{#set: direction=REVERSIBLE}} | ||
+ | {{#set: common name=pol-related}} | ||
+ | {{#set: ec number=EC-4.2.1.2}} | ||
+ | {{#set: common name=fumarate hydration|malate dehydration}} | ||
+ | {{#set: gene associated=Tiso_gene_6720|Tiso_gene_3691}} | ||
+ | {{#set: in pathway=PWY-561|PWY-5913|P42-PWY|PWY-7384|PWY-5392|P23-PWY|P105-PWY|PWY-6969|FERMENTATION-PWY|PWY-6728|REDCITCYC|PWY-7254|P108-PWY|TCA|PWY66-398|PWY-5690}} | ||
+ | {{#set: reconstruction category=orthology}} | ||
+ | {{#set: reconstruction tool=pantograph}} | ||
+ | {{#set: reconstruction source=creinhardtii|athaliana|esiliculosus}} | ||
+ | {{#set: reconstruction category=manual}} | ||
+ | {{#set: reconstruction source=primary_network}} | ||
+ | {{#set: reconstruction category=annotation}} | ||
+ | {{#set: reconstruction tool=pathwaytools}} | ||
+ | {{#set: reconstruction source=experimental_annotation|in-silico_annotation}} |
Revision as of 16:37, 10 January 2018
Contents
Reaction FUMHYDR-RXN
- direction:
- REVERSIBLE
- common name:
- pol-related
- ec number:
- Synonym(s):
- fumarate hydration
- malate dehydration
Reaction Formula
- With identifiers:
- With common name(s):
- 1 (S)-malate[c] <=> 1 fumarate[c] + 1 H2O[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Tiso_gene_6720
- Tiso_gene_3691
- IN-SILICO_ANNOTATION
- EC-NUMBER
- EXPERIMENTAL_ANNOTATION
- EC-NUMBER
- pantograph-esiliculosus
- pantograph-creinhardtii
- IN-SILICO_ANNOTATION
Pathways
- PWY-561, superpathway of glyoxylate cycle and fatty acid degradation: PWY-561
- 5 reactions found over 8 reactions in the full pathway
- PWY-5913, partial TCA cycle (obligate autotrophs): PWY-5913
- 9 reactions found over 11 reactions in the full pathway
- P42-PWY, incomplete reductive TCA cycle: P42-PWY
- 4 reactions found over 7 reactions in the full pathway
- PWY-7384, anaerobic energy metabolism (invertebrates, mitochondrial): PWY-7384
- 7 reactions found over 12 reactions in the full pathway
- PWY-5392, reductive TCA cycle II: PWY-5392
- 5 reactions found over 12 reactions in the full pathway
- P23-PWY, reductive TCA cycle I: P23-PWY
- 7 reactions found over 12 reactions in the full pathway
- P105-PWY, TCA cycle IV (2-oxoglutarate decarboxylase): P105-PWY
- 9 reactions found over 11 reactions in the full pathway
- PWY-6969, TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): PWY-6969
- 9 reactions found over 12 reactions in the full pathway
- FERMENTATION-PWY, mixed acid fermentation: FERMENTATION-PWY
- 9 reactions found over 16 reactions in the full pathway
- PWY-6728, methylaspartate cycle: PWY-6728
- 11 reactions found over 18 reactions in the full pathway
- REDCITCYC, TCA cycle VIII (helicobacter): REDCITCYC
- 6 reactions found over 9 reactions in the full pathway
- PWY-7254, TCA cycle VII (acetate-producers): PWY-7254
- 5 reactions found over 9 reactions in the full pathway
- P108-PWY, pyruvate fermentation to propanoate I: P108-PWY
- 3 reactions found over 7 reactions in the full pathway
- TCA, TCA cycle I (prokaryotic): TCA
- 7 reactions found over 10 reactions in the full pathway
- PWY66-398, TCA cycle III (animals): PWY66-398
- 10 reactions found over 11 reactions in the full pathway
- PWY-5690, TCA cycle II (plants and fungi): PWY-5690
- 6 reactions found over 9 reactions in the full pathway
Reconstruction information
External links
- RHEA:
- PIR:
- LIGAND-RXN:
- UNIPROT: