Difference between revisions of "RXN-2141"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11839 RXN-11839] == * direction: ** LEFT-TO-RIGHT * common name: ** trna_pseudouridinesynthase...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17115 RXN-17115] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11839 RXN-11839] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17115 RXN-17115] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
* common name:
 
** trna_pseudouridinesynthase
 
** trna_pseudouridine_synthase
 
 
* ec number:
 
* ec number:
** [http://enzyme.expasy.org/EC/5.4.99.25 EC-5.4.99.25]
+
** [http://enzyme.expasy.org/EC/1.1.1 EC-1.1.1]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
** 1 [[tRNA-uridine55]][c] '''=>''' 1 [[tRNA-pseudouridine55]][c]
+
** 1 [[CPD-18493]][c] '''+''' 1 [[NAD]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[CPD-18494]][c] '''+''' 1 [[NADH]][c]
 
* With common name(s):
 
* With common name(s):
** 1 a uridine55 in tRNA[c] '''=>''' 1 a pseudouridine55 in tRNA[c]
+
** 1 (3S)-hydroxy-(6Z,9Z,12Z,15Z,18Z)-tetracosapentaenoyl-CoA[c] '''+''' 1 NAD+[c] '''=>''' 1 H+[c] '''+''' 1 3-oxo-(6Z,9Z,12Z,15Z,18Z)-tetracosapentaenoyl-CoA[c] '''+''' 1 NADH[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
Genes have been associated with this reaction based on different elements listed below.
 
* [[Tiso_gene_11913]]
 
** IN-SILICO_ANNOTATION
 
***AUTOMATED-NAME-MATCH
 
* [[Tiso_gene_2988]]
 
** IN-SILICO_ANNOTATION
 
***AUTOMATED-NAME-MATCH
 
* [[Tiso_gene_18959]]
 
** IN-SILICO_ANNOTATION
 
***AUTOMATED-NAME-MATCH
 
* [[Tiso_gene_9833]]
 
** IN-SILICO_ANNOTATION
 
***AUTOMATED-NAME-MATCH
 
* [[Tiso_gene_4020]]
 
** IN-SILICO_ANNOTATION
 
***AUTOMATED-NAME-MATCH
 
* [[Tiso_gene_4021]]
 
** IN-SILICO_ANNOTATION
 
***AUTOMATED-NAME-MATCH
 
* [[Tiso_gene_19622]]
 
** IN-SILICO_ANNOTATION
 
***AUTOMATED-NAME-MATCH
 
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-7726]], (4Z,7Z,10Z,13Z,16Z)-docosa-4,7,10,13,16-pentaenoate biosynthesis (6-desaturase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7726 PWY-7726]
 +
** '''5''' reactions found over '''13''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* [[annotation]]:
 
* [[annotation]]:
 
** [[pathwaytools]]:
 
** [[pathwaytools]]:
 +
*** [[experimental_annotation]]
 
*** [[in-silico_annotation]]
 
*** [[in-silico_annotation]]
 
== External links  ==
 
== External links  ==
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
{{#set: common name=trna_pseudouridinesynthase}}
+
{{#set: ec number=EC-1.1.1}}
{{#set: common name=trna_pseudouridine_synthase}}
+
{{#set: in pathway=PWY-7726}}
{{#set: ec number=EC-5.4.99.25}}
+
{{#set: gene associated=Tiso_gene_11913|Tiso_gene_2988|Tiso_gene_18959|Tiso_gene_9833|Tiso_gene_4020|Tiso_gene_4021|Tiso_gene_19622}}
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{{#set: in pathway=}}
+
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
{{#set: reconstruction source=in-silico_annotation}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}

Revision as of 17:37, 10 January 2018

Reaction RXN-17115

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 (3S)-hydroxy-(6Z,9Z,12Z,15Z,18Z)-tetracosapentaenoyl-CoA[c] + 1 NAD+[c] => 1 H+[c] + 1 3-oxo-(6Z,9Z,12Z,15Z,18Z)-tetracosapentaenoyl-CoA[c] + 1 NADH[c]

Genes associated with this reaction

Pathways

  • PWY-7726, (4Z,7Z,10Z,13Z,16Z)-docosa-4,7,10,13,16-pentaenoate biosynthesis (6-desaturase): PWY-7726
    • 5 reactions found over 13 reactions in the full pathway

Reconstruction information

External links