Difference between revisions of "CPD-1084"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=CATAL-RXN CATAL-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/...")
 
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=GlcA-GlcNAc-GlcA-Gal-Gal-Xyl-Protein GlcA-GlcNAc-GlcA-Gal-Gal-Xyl-Protein] == * common name: **...")
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[[Category:Reaction]]
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[[Category:Metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=CATAL-RXN CATAL-RXN] ==
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=GlcA-GlcNAc-GlcA-Gal-Gal-Xyl-Protein GlcA-GlcNAc-GlcA-Gal-Gal-Xyl-Protein] ==
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* direction:
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* common name:
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** LEFT-TO-RIGHT
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** a [protein]-3-O-(β-D-GlcA-(1→3)-α-D-GlcNAc-(1→4)-β-D-GlcA-(1→3)-β-D-Gal-(1→3)-β-D-Gal-(1→4)-β-D-Xyl)-L-serine
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* ec number:
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** [http://enzyme.expasy.org/EC/1.11.1.6 EC-1.11.1.6]
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** [http://enzyme.expasy.org/EC/1.11.1.21 EC-1.11.1.21]
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* Synonym(s):
 
* Synonym(s):
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** β-D-glucosyluronate-(1->3)-α-N-acetyl-D-glucosaminyl-(1->4)-β-D-glucosyluronate-(1->3)-β-D-galactosyl-(1->3)-β-D-galactosyl-(1->4)-β-D-xylosyl-[proteoglycan]
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** β-D-glucosyluronate-(1->3)-α-N-acetyl-D-glucosaminyl-(1->4)-β-D-glucosyluronate-(1->3)-β-D-galactosyl-(1->3)-β-D-galactosyl-(1->4)-β-D-xylosylproteoglycan
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** β-D-glucuronosyl-(1->3)-α-N-acetyl-D-glucosaminyl-(1->4)-β-D-glucuronosyl-(1->3)-β-D-galactosyl-(1->3)-β-D-galactosyl-(1->4)-β-D-xylosyl-[core protein]
  
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== Reaction Formula ==
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== Reaction(s) known to consume the compound ==
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* With identifiers:
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* [[2.4.1.224-RXN]]
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** 2 [[HYDROGEN-PEROXIDE]][c] '''=>''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 2 [[WATER]][c]
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== Reaction(s) known to produce the compound ==
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* With common name(s):
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* [[2.4.1.225-RXN]]
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** 2 hydrogen peroxide[c] '''=>''' 1 oxygen[c] '''+''' 2 H2O[c]
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== Reaction(s) of unknown directionality ==
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_3006]]
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** [[pantograph]]-[[synechocystis]]
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* [[Tiso_gene_11916]]
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** [[pantograph]]-[[synechocystis]]
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* [[Tiso_gene_5435]]
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** [[pantograph]]-[[synechocystis]]
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* [[Tiso_gene_19683]]
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** [[pantograph]]-[[synechocystis]]
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* [[Tiso_gene_11607]]
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** [[pantograph]]-[[synechocystis]]
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* [[Tiso_gene_12499]]
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** [[pantograph]]-[[synechocystis]]
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* [[Tiso_gene_4990]]
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** [[pantograph]]-[[synechocystis]]
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* [[Tiso_gene_15923]]
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** [[pantograph]]-[[synechocystis]]
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== Pathways  ==
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* [[PWY-5506]], methanol oxidation to formaldehyde IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5506 PWY-5506]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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* [[DETOX1-PWY]], superoxide radicals degradation: [http://metacyc.org/META/NEW-IMAGE?object=DETOX1-PWY DETOX1-PWY]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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* [[DETOX1-PWY-1]], reactive oxygen species degradation: [http://metacyc.org/META/NEW-IMAGE?object=DETOX1-PWY-1 DETOX1-PWY-1]
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** '''5''' reactions found over '''6''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[synechocystis]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: common name=a [protein]-3-O-(β-D-GlcA-(1→3)-α-D-GlcNAc-(1→4)-β-D-GlcA-(1→3)-β-D-Gal-(1→3)-β-D-Gal-(1→4)-β-D-Xyl)-L-serine}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20309 20309]
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{{#set: common name=β-D-glucosyluronate-(1->3)-α-N-acetyl-D-glucosaminyl-(1->4)-β-D-glucosyluronate-(1->3)-β-D-galactosyl-(1->3)-β-D-galactosyl-(1->4)-β-D-xylosyl-[proteoglycan]|β-D-glucosyluronate-(1->3)-α-N-acetyl-D-glucosaminyl-(1->4)-β-D-glucosyluronate-(1->3)-β-D-galactosyl-(1->3)-β-D-galactosyl-(1->4)-β-D-xylosylproteoglycan|β-D-glucuronosyl-(1->3)-α-N-acetyl-D-glucosaminyl-(1->4)-β-D-glucuronosyl-(1->3)-β-D-galactosyl-(1->3)-β-D-galactosyl-(1->4)-β-D-xylosyl-[core protein]}}
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* LIGAND-RXN:
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{{#set: consumed by=2.4.1.224-RXN}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00009 R00009]
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{{#set: produced by=2.4.1.225-RXN}}
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* UNIPROT:
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** [http://www.uniprot.org/uniprot/P11934 P11934]
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** [http://www.uniprot.org/uniprot/P24270 P24270]
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** [http://www.uniprot.org/uniprot/P21179 P21179]
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** [http://www.uniprot.org/uniprot/P24168 P24168]
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** [http://www.uniprot.org/uniprot/Q7M184 Q7M184]
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** [http://www.uniprot.org/uniprot/P0A327 P0A327]
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** [http://www.uniprot.org/uniprot/P45737 P45737]
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** [http://www.uniprot.org/uniprot/P42321 P42321]
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** [http://www.uniprot.org/uniprot/O28050 O28050]
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** [http://www.uniprot.org/uniprot/Q59337 Q59337]
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** [http://www.uniprot.org/uniprot/P77872 P77872]
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** [http://www.uniprot.org/uniprot/P00432 P00432]
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** [http://www.uniprot.org/uniprot/P15202 P15202]
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** [http://www.uniprot.org/uniprot/P06115 P06115]
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** [http://www.uniprot.org/uniprot/P07820 P07820]
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** [http://www.uniprot.org/uniprot/P17750 P17750]
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** [http://www.uniprot.org/uniprot/P13029 P13029]
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** [http://www.uniprot.org/uniprot/P17336 P17336]
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** [http://www.uniprot.org/uniprot/P04040 P04040]
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** [http://www.uniprot.org/uniprot/P25890 P25890]
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** [http://www.uniprot.org/uniprot/P04762 P04762]
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** [http://www.uniprot.org/uniprot/P29756 P29756]
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** [http://www.uniprot.org/uniprot/P44390 P44390]
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** [http://www.uniprot.org/uniprot/P42234 P42234]
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** [http://www.uniprot.org/uniprot/Q9JRF5 Q9JRF5]
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** [http://www.uniprot.org/uniprot/P94377 P94377]
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** [http://www.uniprot.org/uniprot/Q9ZKX5 Q9ZKX5]
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** [http://www.uniprot.org/uniprot/Q59296 Q59296]
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** [http://www.uniprot.org/uniprot/P55306 P55306]
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** [http://www.uniprot.org/uniprot/P26901 P26901]
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** [http://www.uniprot.org/uniprot/P14412 P14412]
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** [http://www.uniprot.org/uniprot/P07145 P07145]
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** [http://www.uniprot.org/uniprot/P17598 P17598]
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** [http://www.uniprot.org/uniprot/Q41136 Q41136]
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** [http://www.uniprot.org/uniprot/P30567 P30567]
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** [http://www.uniprot.org/uniprot/P30263 P30263]
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** [http://www.uniprot.org/uniprot/P29422 P29422]
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** [http://www.uniprot.org/uniprot/P30266 P30266]
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** [http://www.uniprot.org/uniprot/P37743 P37743]
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** [http://www.uniprot.org/uniprot/P33569 P33569]
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** [http://www.uniprot.org/uniprot/P18123 P18123]
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** [http://www.uniprot.org/uniprot/P55303 P55303]
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** [http://www.uniprot.org/uniprot/Q01297 Q01297]
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** [http://www.uniprot.org/uniprot/P49318 P49318]
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** [http://www.uniprot.org/uniprot/P18122 P18122]
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** [http://www.uniprot.org/uniprot/P49315 P49315]
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** [http://www.uniprot.org/uniprot/Q27710 Q27710]
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** [http://www.uniprot.org/uniprot/P45739 P45739]
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** [http://www.uniprot.org/uniprot/P0A323 P0A323]
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** [http://www.uniprot.org/uniprot/P55307 P55307]
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** [http://www.uniprot.org/uniprot/P55308 P55308]
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** [http://www.uniprot.org/uniprot/P55305 P55305]
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** [http://www.uniprot.org/uniprot/P50979 P50979]
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** [http://www.uniprot.org/uniprot/Q55110 Q55110]
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** [http://www.uniprot.org/uniprot/P12365 P12365]
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** [http://www.uniprot.org/uniprot/P73911 P73911]
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** [http://www.uniprot.org/uniprot/P77038 P77038]
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** [http://www.uniprot.org/uniprot/P25819 P25819]
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** [http://www.uniprot.org/uniprot/O48562 O48562]
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** [http://www.uniprot.org/uniprot/Q43206 Q43206]
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** [http://www.uniprot.org/uniprot/O22472 O22472]
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** [http://www.uniprot.org/uniprot/P30265 P30265]
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** [http://www.uniprot.org/uniprot/P48351 P48351]
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** [http://www.uniprot.org/uniprot/P48352 P48352]
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** [http://www.uniprot.org/uniprot/Q39633 Q39633]
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** [http://www.uniprot.org/uniprot/Q39634 Q39634]
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** [http://www.uniprot.org/uniprot/P32290 P32290]
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** [http://www.uniprot.org/uniprot/O81336 O81336]
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** [http://www.uniprot.org/uniprot/O81337 O81337]
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** [http://www.uniprot.org/uniprot/P49317 P49317]
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** [http://www.uniprot.org/uniprot/Q27487 Q27487]
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** [http://www.uniprot.org/uniprot/Q8MYL7 Q8MYL7]
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** [http://www.uniprot.org/uniprot/Q9Z598 Q9Z598]
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** [http://www.uniprot.org/uniprot/O61235 O61235]
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** [http://www.uniprot.org/uniprot/O33613 O33613]
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** [http://www.uniprot.org/uniprot/P77948 P77948]
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** [http://www.uniprot.org/uniprot/O73955 O73955]
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** [http://www.uniprot.org/uniprot/O59651 O59651]
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** [http://www.uniprot.org/uniprot/O31066 O31066]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: ec number=EC-1.11.1.6}}
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{{#set: ec number=EC-1.11.1.21}}
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{{#set: gene associated=Tiso_gene_3006|Tiso_gene_11916|Tiso_gene_5435|Tiso_gene_19683|Tiso_gene_11607|Tiso_gene_12499|Tiso_gene_4990|Tiso_gene_15923}}
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{{#set: in pathway=PWY-5506|DETOX1-PWY|DETOX1-PWY-1}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=synechocystis}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Revision as of 16:38, 10 January 2018

Metabolite GlcA-GlcNAc-GlcA-Gal-Gal-Xyl-Protein

  • common name:
    • a [protein]-3-O-(β-D-GlcA-(1→3)-α-D-GlcNAc-(1→4)-β-D-GlcA-(1→3)-β-D-Gal-(1→3)-β-D-Gal-(1→4)-β-D-Xyl)-L-serine
  • Synonym(s):
    • β-D-glucosyluronate-(1->3)-α-N-acetyl-D-glucosaminyl-(1->4)-β-D-glucosyluronate-(1->3)-β-D-galactosyl-(1->3)-β-D-galactosyl-(1->4)-β-D-xylosyl-[proteoglycan]
    • β-D-glucosyluronate-(1->3)-α-N-acetyl-D-glucosaminyl-(1->4)-β-D-glucosyluronate-(1->3)-β-D-galactosyl-(1->3)-β-D-galactosyl-(1->4)-β-D-xylosylproteoglycan
    • β-D-glucuronosyl-(1->3)-α-N-acetyl-D-glucosaminyl-(1->4)-β-D-glucuronosyl-(1->3)-β-D-galactosyl-(1->3)-β-D-galactosyl-(1->4)-β-D-xylosyl-[core protein]

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links

"a [protein]-3-O-(β-D-GlcA-(1→3)-α-D-GlcNAc-(1→4)-β-D-GlcA-(1→3)-β-D-Gal-(1→3)-β-D-Gal-(1→4)-β-D-Xyl)-L-serine" cannot be used as a page name in this wiki.
  • "β-D-glucosyluronate-(1->3)-α-N-acetyl-D-glucosaminyl-(1->4)-β-D-glucosyluronate-(1->3)-β-D-galactosyl-(1->3)-β-D-galactosyl-(1->4)-β-D-xylosyl-[proteoglycan" cannot be used as a page name in this wiki.
  • "β-D-glucosyluronate-(1->3)-α-N-acetyl-D-glucosaminyl-(1->4)-β-D-glucosyluronate-(1->3)-β-D-galactosyl-(1->3)-β-D-galactosyl-(1->4)-β-D-xylosylproteoglycan" cannot be used as a page name in this wiki.
  • "β-D-glucuronosyl-(1->3)-α-N-acetyl-D-glucosaminyl-(1->4)-β-D-glucuronosyl-(1->3)-β-D-galactosyl-(1->3)-β-D-galactosyl-(1->4)-β-D-xylosyl-[core protein" cannot be used as a page name in this wiki.


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