Difference between revisions of "Tiso gene 1960"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14326 RXN-14326] == * direction: ** LEFT-TO-RIGHT * common name: ** diphthine_synthase * ec num...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10642 RXN-10642] == * direction: ** REVERSIBLE * common name: ** uroporphyrinogen_chloroplast *...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14326 RXN-14326] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10642 RXN-10642] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** diphthine_synthase
+
** uroporphyrinogen_chloroplast
 +
** uroporphyrinogen_decarboxylase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.1.1.98 EC-2.1.1.98]
+
** [http://enzyme.expasy.org/EC/4.1.1.37 EC-4.1.1.37]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 3 [[S-ADENOSYLMETHIONINE]][c] '''+''' 1 [[2-3-CARBOXY-3-AMINOPROPYL-L-HISTIDINE]][c] '''=>''' 1 [[DIPHTINE]][c] '''+''' 3 [[PROTON]][c] '''+''' 3 [[ADENOSYL-HOMO-CYS]][c]
+
** 4 [[PROTON]][c] '''+''' 1 [[CPD-11444]][c] '''<=>''' 1 [[COPROPORPHYRINOGEN_I]][c] '''+''' 4 [[CARBON-DIOXIDE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 3 S-adenosyl-L-methionine[c] '''+''' 1 a 2-[(3S)-3-amino-3-carboxypropyl]-L-histidine-[translation elongation factor 2][c] '''=>''' 1 a diphthine-[translation elongation factor 2][c] '''+''' 3 H+[c] '''+''' 3 S-adenosyl-L-homocysteine[c]
+
** 4 H+[c] '''+''' 1 uroporphyrinogen-I[c] '''<=>''' 1 coproporphyrinogen I[c] '''+''' 4 CO2[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_15743]]
+
* [[Tiso_gene_19684]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_18743]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_5173]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
** [[pantograph]]-[[esiliculosus]]
 +
** [[pantograph]]-[[creinhardtii]]
 +
* [[Tiso_gene_18744]]
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
 
** [[pantograph]]-[[esiliculosus]]
 
** [[pantograph]]-[[esiliculosus]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-6482]], diphthamide biosynthesis (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6482 PWY-6482]
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* [[orthology]]:
 
* [[orthology]]:
 
** [[pantograph]]:
 
** [[pantograph]]:
 +
*** [[creinhardtii]]
 
*** [[esiliculosus]]
 
*** [[esiliculosus]]
 
* [[annotation]]:
 
* [[annotation]]:
 
** [[pathwaytools]]:
 
** [[pathwaytools]]:
 +
*** [[experimental_annotation]]
 
*** [[in-silico_annotation]]
 
*** [[in-silico_annotation]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=31239 31239]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R10306 R10306]
+
** [http://www.genome.jp/dbget-bin/www_bget?R04972 R04972]
−
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: direction=REVERSIBLE}}
−
{{#set: common name=diphthine_synthase}}
+
{{#set: common name=uroporphyrinogen_chloroplast}}
−
{{#set: ec number=EC-2.1.1.98}}
+
{{#set: common name=uroporphyrinogen_decarboxylase}}
−
{{#set: gene associated=Tiso_gene_15743}}
+
{{#set: ec number=EC-4.1.1.37}}
−
{{#set: in pathway=PWY-6482}}
+
{{#set: gene associated=Tiso_gene_19684|Tiso_gene_18743|Tiso_gene_5173|Tiso_gene_18744}}
 +
{{#set: in pathway=}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=esiliculosus}}
+
{{#set: reconstruction source=creinhardtii|esiliculosus}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction source=in-silico_annotation}}
+
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}

Revision as of 16:38, 10 January 2018

Reaction RXN-10642

  • direction:
    • REVERSIBLE
  • common name:
    • uroporphyrinogen_chloroplast
    • uroporphyrinogen_decarboxylase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links







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