Difference between revisions of "CPD-15368"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-5114 RXN0-5114] == * direction: ** LEFT-TO-RIGHT * common name: ** phosphoserine_chloroplastic...")
 
(Created page with "Category:Gene == Gene Tiso_gene_3498 == * left end position: ** 61 * transcription direction: ** POSITIVE * right end position: ** 5306 * centisome position: ** 0.16895635...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-5114 RXN0-5114] ==
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== Gene Tiso_gene_3498 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 61
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* common name:
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* transcription direction:
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** phosphoserine_chloroplastic
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** POSITIVE
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* ec number:
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* right end position:
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** [http://enzyme.expasy.org/EC/3.1.3.3 EC-3.1.3.3]
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** 5306
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* centisome position:
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** 0.16895635   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* [[DNA-LIGASE-ATP-RXN]]
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** 1 [[3-P-SERINE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[SER]][c] '''+''' 1 [[Pi]][c]
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** in-silico_annotation
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* With common name(s):
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***ec-number
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** 1 3-phospho-L-serine[c] '''+''' 1 H2O[c] '''=>''' 1 L-serine[c] '''+''' 1 phosphate[c]
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* [[RXN-17917]]
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** in-silico_annotation
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== Genes associated with this reaction  ==
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***ec-number
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Genes have been associated with this reaction based on different elements listed below.
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* [[RXN-17918]]
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* [[Tiso_gene_16271]]
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** in-silico_annotation
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** [[pantograph]]-[[synechocystis]]
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***ec-number
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* [[Tiso_gene_6236]]
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* [[RXN-17919]]
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** IN-SILICO_ANNOTATION
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** in-silico_annotation
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***EC-NUMBER
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***ec-number
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** EXPERIMENTAL_ANNOTATION
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== Pathways associated ==
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***EC-NUMBER
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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== Pathways  ==
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* [[SERSYN-PWY]], L-serine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=SERSYN-PWY SERSYN-PWY]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[creinhardtii]]
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*** [[synechocystis]]
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*** [[esiliculosus]]
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*** [[athaliana]]
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* [[manual]]:
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** [[primary_network]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: left end position=61}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21208 21208]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: right end position=5306}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00582 R00582]
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{{#set: centisome position=0.16895635    }}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction associated=DNA-LIGASE-ATP-RXN|RXN-17917|RXN-17918|RXN-17919}}
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{{#set: common name=phosphoserine_chloroplastic}}
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{{#set: ec number=EC-3.1.3.3}}
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{{#set: gene associated=Tiso_gene_16271|Tiso_gene_6236}}
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{{#set: in pathway=SERSYN-PWY}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=creinhardtii|synechocystis|esiliculosus|athaliana}}
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{{#set: reconstruction category=manual}}
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{{#set: reconstruction source=primary_network}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Revision as of 16:48, 10 January 2018

Gene Tiso_gene_3498

  • left end position:
    • 61
  • transcription direction:
    • POSITIVE
  • right end position:
    • 5306
  • centisome position:
    • 0.16895635
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=CPD-15368&oldid=14688"