Difference between revisions of "Tiso gene 13864"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=DI-H-OROTATE DI-H-OROTATE] == * smiles: ** C1(C(=O)NC(=O)NC(C(=O)[O-])1) * inchi key: ** InChIK...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.7.9.3-RXN 2.7.9.3-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** selenophosphate_synthet...")
Line 1: Line 1:
−
[[Category:Metabolite]]
+
[[Category:Reaction]]
−
== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=DI-H-OROTATE DI-H-OROTATE] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.7.9.3-RXN 2.7.9.3-RXN] ==
−
* smiles:
+
* direction:
−
** C1(C(=O)NC(=O)NC(C(=O)[O-])1)
+
** LEFT-TO-RIGHT
−
* inchi key:
+
−
** InChIKey=UFIVEPVSAGBUSI-REOHCLBHSA-M
+
 
* common name:
 
* common name:
−
** (S)-dihydroorotate
+
** selenophosphate_synthetase
−
* molecular weight:
+
* ec number:
−
** 157.105   
+
** [http://enzyme.expasy.org/EC/2.7.9.3 EC-2.7.9.3]
 
* Synonym(s):
 
* Synonym(s):
−
** dihydro-L-orotate
 
−
** (S)-4,5-dihydroorotate
 
−
** (S)-4,5-dihydroorotic acid
 
−
** (S)-hydroorotic acid
 
−
** (S)-di-H-orotate
 
−
** L-dihydroorotate
 
−
** 4,5-dihydro-L-orotate
 
−
** L-4,5-dihydroorotate
 
−
** (S)-4-pyrimidinecarboxylic acid
 
  
−
== Reaction(s) known to consume the compound ==
+
== Reaction Formula ==
−
* [[RXN0-6491]]
+
* With identifiers:
−
* [[RXN0-6554]]
+
** 1 [[WATER]][c] '''+''' 1 [[SE-2]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[SEPO3]][c] '''+''' 1 [[Pi]][c] '''+''' 1 [[AMP]][c]
−
* [[DIHYDROOROTATE-DEHYDROGENASE-RXN]]
+
* With common name(s):
−
* [[RXN-9929]]
+
** 1 H2O[c] '''+''' 1 selenide[c] '''+''' 1 ATP[c] '''=>''' 1 selenophosphate[c] '''+''' 1 phosphate[c] '''+''' 1 AMP[c]
−
== Reaction(s) known to produce the compound ==
+
 
−
* [[RXN0-6490]]
+
== Genes associated with this reaction  ==
−
== Reaction(s) of unknown directionality ==
+
Genes have been associated with this reaction based on different elements listed below.
−
* [[DIHYDROOROT-RXN]]
+
* [[Tiso_gene_5669]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_14608]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_5668]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
== Pathways  ==
 +
* [[PWY0-901]], L-selenocysteine biosynthesis I (bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-901 PWY0-901]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-6281]], L-selenocysteine biosynthesis II (archaea and eukaryotes): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6281 PWY-6281]
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* [[orthology]]:
 +
** [[pantograph]]:
 +
*** [[esiliculosus]]
 +
* [[annotation]]:
 +
** [[pathwaytools]]:
 +
*** [[in-silico_annotation]]
 
== External links  ==
 
== External links  ==
−
* CAS : 5988-19-2
+
* RHEA:
−
* CAS : 155-54-4
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18737 18737]
−
* METABOLIGHTS : MTBLC30864
+
* LIGAND-RXN:
−
* PUBCHEM:
+
** [http://www.genome.jp/dbget-bin/www_bget?R03595 R03595]
−
** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=5460289 5460289]
+
* UNIPROT:
−
* HMDB : HMDB00528
+
** [http://www.uniprot.org/uniprot/Q9PMF9 Q9PMF9]
−
* LIGAND-CPD:
+
{{#set: direction=LEFT-TO-RIGHT}}
−
** [http://www.genome.jp/dbget-bin/www_bget?C00337 C00337]
+
{{#set: common name=selenophosphate_synthetase}}
−
* CHEMSPIDER:
+
{{#set: ec number=EC-2.7.9.3}}
−
** [http://www.chemspider.com/Chemical-Structure.4573876.html 4573876]
+
{{#set: gene associated=Tiso_gene_5669|Tiso_gene_14608|Tiso_gene_5668}}
−
* CHEBI:
+
{{#set: in pathway=PWY0-901|PWY-6281}}
−
** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=30864 30864]
+
{{#set: reconstruction category=orthology}}
−
* BIGG : dhor__S
+
{{#set: reconstruction tool=pantograph}}
−
{{#set: smiles=C1(C(=O)NC(=O)NC(C(=O)[O-])1)}}
+
{{#set: reconstruction source=esiliculosus}}
−
{{#set: inchi key=InChIKey=UFIVEPVSAGBUSI-REOHCLBHSA-M}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: common name=(S)-dihydroorotate}}
+
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: molecular weight=157.105    }}
+
{{#set: reconstruction source=in-silico_annotation}}
−
{{#set: common name=dihydro-L-orotate|(S)-4,5-dihydroorotate|(S)-4,5-dihydroorotic acid|(S)-hydroorotic acid|(S)-di-H-orotate|L-dihydroorotate|4,5-dihydro-L-orotate|L-4,5-dihydroorotate|(S)-4-pyrimidinecarboxylic acid}}
+
−
{{#set: consumed by=RXN0-6491|RXN0-6554|DIHYDROOROTATE-DEHYDROGENASE-RXN|RXN-9929}}
+
−
{{#set: produced by=RXN0-6490}}
+
−
{{#set: consumed or produced by=DIHYDROOROT-RXN}}
+

Revision as of 16:48, 10 January 2018

Reaction 2.7.9.3-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • selenophosphate_synthetase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 H2O[c] + 1 selenide[c] + 1 ATP[c] => 1 selenophosphate[c] + 1 phosphate[c] + 1 AMP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY0-901, L-selenocysteine biosynthesis I (bacteria): PWY0-901
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-6281, L-selenocysteine biosynthesis II (archaea and eukaryotes): PWY-6281
    • 4 reactions found over 4 reactions in the full pathway

Reconstruction information

External links






Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_13864&oldid=14735"