Difference between revisions of "Tiso gene 15839"

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(Created page with "Category:Gene == Gene Tiso_gene_13142 == * left end position: ** 1534 * transcription direction: ** NEGATIVE * right end position: ** 4981 * centisome position: ** 23.6072...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIAMINOPIMDECARB-RXN DIAMINOPIMDECARB-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** diami...")
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_13142 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIAMINOPIMDECARB-RXN DIAMINOPIMDECARB-RXN] ==
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* left end position:
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* direction:
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** 1534
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** NEGATIVE
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** diaminopimelate_decarboxylase
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* right end position:
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* ec number:
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** 4981
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** [http://enzyme.expasy.org/EC/4.1.1.20 EC-4.1.1.20]
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* centisome position:
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** 23.607264   
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* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[THREONINE--TRNA-LIGASE-RXN]]
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* With identifiers:
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** in-silico_annotation
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** 1 [[PROTON]][c] '''+''' 1 [[MESO-DIAMINOPIMELATE]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[LYS]][c]
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***ec-number
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* With common name(s):
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** experimental_annotation
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** 1 H+[c] '''+''' 1 meso-diaminopimelate[c] '''=>''' 1 CO2[c] '''+''' 1 L-lysine[c]
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***ec-number
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_10737]]
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** [[pantograph]]-[[synechocystis]]
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* [[Tiso_gene_12041]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[synechocystis]]
 
** [[pantograph]]-[[esiliculosus]]
 
** [[pantograph]]-[[esiliculosus]]
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== Pathways associated ==
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** [[pantograph]]-[[creinhardtii]]
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* [[TRNA-CHARGING-PWY]]
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== Pathways ==
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* [[PWY-5097]], L-lysine biosynthesis VI: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5097 PWY-5097]
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** '''7''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-2942]], L-lysine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2942 PWY-2942]
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** '''6''' reactions found over '''7''' reactions in the full pathway
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* [[DAPLYSINESYN-PWY]], L-lysine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=DAPLYSINESYN-PWY DAPLYSINESYN-PWY]
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** '''6''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-2941]], L-lysine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2941 PWY-2941]
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** '''6''' reactions found over '''9''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[creinhardtii]]
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*** [[synechocystis]]
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*** [[esiliculosus]]
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*** [[athaliana]]
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* [[manual]]:
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** [[primary_network]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[in-silico_annotation]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=1534}}
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* RHEA:
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{{#set: transcription direction=NEGATIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15101 15101]
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{{#set: right end position=4981}}
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* LIGAND-RXN:
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{{#set: centisome position=23.607264    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R00451 R00451]
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{{#set: reaction associated=THREONINE--TRNA-LIGASE-RXN}}
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* UNIPROT:
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{{#set: pathway associated=TRNA-CHARGING-PWY}}
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** [http://www.uniprot.org/uniprot/P19572 P19572]
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** [http://www.uniprot.org/uniprot/P0A5M4 P0A5M4]
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** [http://www.uniprot.org/uniprot/P44316 P44316]
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** [http://www.uniprot.org/uniprot/P56129 P56129]
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** [http://www.uniprot.org/uniprot/O67262 O67262]
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** [http://www.uniprot.org/uniprot/Q9JWA6 Q9JWA6]
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** [http://www.uniprot.org/uniprot/Q9CG26 Q9CG26]
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** [http://www.uniprot.org/uniprot/P00861 P00861]
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** [http://www.uniprot.org/uniprot/O27390 O27390]
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** [http://www.uniprot.org/uniprot/Q9PII5 Q9PII5]
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** [http://www.uniprot.org/uniprot/Q58497 Q58497]
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** [http://www.uniprot.org/uniprot/O29458 O29458]
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** [http://www.uniprot.org/uniprot/P41023 P41023]
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** [http://www.uniprot.org/uniprot/P23630 P23630]
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** [http://www.uniprot.org/uniprot/P09890 P09890]
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** [http://www.uniprot.org/uniprot/Q55484 Q55484]
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** [http://www.uniprot.org/uniprot/O05321 O05321]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=diaminopimelate_decarboxylase}}
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{{#set: ec number=EC-4.1.1.20}}
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{{#set: gene associated=Tiso_gene_10737|Tiso_gene_12041}}
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{{#set: in pathway=PWY-5097|PWY-2942|DAPLYSINESYN-PWY|PWY-2941}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=creinhardtii|synechocystis|esiliculosus|athaliana}}
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{{#set: reconstruction category=manual}}
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{{#set: reconstruction source=primary_network}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=in-silico_annotation}}

Revision as of 16:51, 10 January 2018

Reaction DIAMINOPIMDECARB-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • diaminopimelate_decarboxylase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5097, L-lysine biosynthesis VI: PWY-5097
    • 7 reactions found over 7 reactions in the full pathway
  • PWY-2942, L-lysine biosynthesis III: PWY-2942
    • 6 reactions found over 7 reactions in the full pathway
  • DAPLYSINESYN-PWY, L-lysine biosynthesis I: DAPLYSINESYN-PWY
    • 6 reactions found over 9 reactions in the full pathway
  • PWY-2941, L-lysine biosynthesis II: PWY-2941
    • 6 reactions found over 9 reactions in the full pathway

Reconstruction information

External links







Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_15839&oldid=14902"