Difference between revisions of "R03845"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.5.1.32-RXN 2.5.1.32-RXN] == * direction: ** LEFT-TO-RIGHT * Synonym(s): ** PSase ** geranylgerany...")
 
(Created page with "Category:Gene == Gene Tiso_gene_10528 == * left end position: ** 5895 * transcription direction: ** POSITIVE * right end position: ** 8404 * centisome position: ** 69.7055...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.5.1.32-RXN 2.5.1.32-RXN] ==
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== Gene Tiso_gene_10528 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 5895
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* transcription direction:
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** POSITIVE
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* right end position:
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** 8404
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* centisome position:
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** 69.70557   
 
* Synonym(s):
 
* Synonym(s):
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** PSase
 
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** geranylgeranyl-diphosphate geranylgeranyltransferase
 
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* [[ALCOHOL-O-ACETYLTRANSFERASE-RXN]]
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** 2 [[GERANYLGERANYL-PP]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[CPD-464]][c]
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** in-silico_annotation
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* With common name(s):
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***ec-number
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** 2 geranylgeranyl diphosphate[c] '''=>''' 1 diphosphate[c] '''+''' 1 prephytoene diphosphate[c]
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* [[RXN-12362]]
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** in-silico_annotation
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== Genes associated with this reaction  ==
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***ec-number
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Genes have been associated with this reaction based on different elements listed below.
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* [[RXN-12363]]
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* [[Tiso_gene_15914]]
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** in-silico_annotation
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** [[pantograph]]-[[synechocystis]]
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***ec-number
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** [[pantograph]]-[[esiliculosus]]
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* [[RXN-9192]]
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== Pathways  ==
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** in-silico_annotation
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* [[PWY-6287]], neurosporene biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6287 PWY-6287]
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***ec-number
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** '''4''' reactions found over '''5''' reactions in the full pathway
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== Pathways associated ==
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* [[PWY-6475]], trans-lycopene biosynthesis II (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6475 PWY-6475]
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* [[PWY-5835]]
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** '''5''' reactions found over '''8''' reactions in the full pathway
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* [[PWY-6801]]
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[synechocystis]]
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*** [[esiliculosus]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: left end position=5895}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22296 22296]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: right end position=8404}}
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** [http://www.genome.jp/dbget-bin/www_bget?R02065 R02065]
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{{#set: centisome position=69.70557    }}
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* UNIPROT:
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{{#set: reaction associated=ALCOHOL-O-ACETYLTRANSFERASE-RXN|RXN-12362|RXN-12363|RXN-9192}}
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** [http://www.uniprot.org/uniprot/P53609 P53609]
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{{#set: pathway associated=PWY-5835|PWY-6801}}
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** [http://www.uniprot.org/uniprot/P37295 P37295]
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** [http://www.uniprot.org/uniprot/P22872 P22872]
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** [http://www.uniprot.org/uniprot/P53610 P53610]
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** [http://www.uniprot.org/uniprot/P53612 P53612]
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** [http://www.uniprot.org/uniprot/P17056 P17056]
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** [http://www.uniprot.org/uniprot/P49293 P49293]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=PSase|geranylgeranyl-diphosphate geranylgeranyltransferase}}
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{{#set: gene associated=Tiso_gene_15914}}
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{{#set: in pathway=PWY-6287|PWY-6475}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=synechocystis|esiliculosus}}
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Revision as of 16:52, 10 January 2018

Gene Tiso_gene_10528

  • left end position:
    • 5895
  • transcription direction:
    • POSITIVE
  • right end position:
    • 8404
  • centisome position:
    • 69.70557
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=R03845&oldid=15064"