Difference between revisions of "Tiso gene 7800"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12200 RXN-12200] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF * ec number: ** [http:/...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=4-HYDROXYPHENYLPYRUVATE-DIOXYGENASE-RXN 4-HYDROXYPHENYLPYRUVATE-DIOXYGENASE-RXN] == * direction: **...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12200 RXN-12200] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=4-HYDROXYPHENYLPYRUVATE-DIOXYGENASE-RXN 4-HYDROXYPHENYLPYRUVATE-DIOXYGENASE-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
 +
** 4-hydroxyphenylpyruvate_dioxygenase
 
** ORF
 
** ORF
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/3.6.1.5 EC-3.6.1.5]
+
** [http://enzyme.expasy.org/EC/1.13.11.27 EC-1.13.11.27]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 2 [[WATER]][c] '''+''' 1 [[CTP]][c] '''=>''' 2 [[PROTON]][c] '''+''' 1 [[CMP]][c] '''+''' 2 [[Pi]][c]
+
** 1 [[P-HYDROXY-PHENYLPYRUVATE]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[HOMOGENTISATE]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 2 H2O[c] '''+''' 1 CTP[c] '''=>''' 2 H+[c] '''+''' 1 CMP[c] '''+''' 2 phosphate[c]
+
** 1 4-hydroxyphenylpyruvate[c] '''+''' 1 oxygen[c] '''=>''' 1 homogentisate[c] '''+''' 1 CO2[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_20236]]
+
* [[Tiso_gene_18977]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** [[pantograph]]-[[athaliana]]
 +
** [[pantograph]]-[[synechocystis]]
 
** [[pantograph]]-[[esiliculosus]]
 
** [[pantograph]]-[[esiliculosus]]
−
* [[Tiso_gene_12899]]
+
* [[Tiso_gene_18328]]
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
−
** EXPERIMENTAL_ANNOTATION
+
** [[pantograph]]-[[athaliana]]
 +
** [[pantograph]]-[[synechocystis]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_18976]]
 +
** IN-SILICO_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7185]], UTP and CTP dephosphorylation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7185 PWY-7185]
+
* [[PWY-1581]], plastoquinol-9 biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-1581 PWY-1581]
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
** '''2''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-7177]], UTP and CTP dephosphorylation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7177 PWY-7177]
+
* [[PWY-7432]], L-phenylalanine biosynthesis III (cytosolic, plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7432 PWY-7432]
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[TYRFUMCAT-PWY]], L-tyrosine degradation I: [http://metacyc.org/META/NEW-IMAGE?object=TYRFUMCAT-PWY TYRFUMCAT-PWY]
 +
** '''4''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-1422]], vitamin E biosynthesis (tocopherols): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1422 PWY-1422]
 +
** '''5''' reactions found over '''7''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* [[orthology]]:
 
* [[orthology]]:
 
** [[pantograph]]:
 
** [[pantograph]]:
 +
*** [[synechocystis]]
 
*** [[esiliculosus]]
 
*** [[esiliculosus]]
−
* [[manual]]:
+
*** [[athaliana]]
−
** [[primary_network]]
+
 
* [[annotation]]:
 
* [[annotation]]:
 
** [[pathwaytools]]:
 
** [[pathwaytools]]:
−
*** [[experimental_annotation]]
 
 
*** [[in-silico_annotation]]
 
*** [[in-silico_annotation]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16189 16189]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R02521 R02521]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P32754 P32754]
 +
** [http://www.uniprot.org/uniprot/Q02110 Q02110]
 +
** [http://www.uniprot.org/uniprot/P32755 P32755]
 +
** [http://www.uniprot.org/uniprot/O48604 O48604]
 +
** [http://www.uniprot.org/uniprot/O23920 O23920]
 +
** [http://www.uniprot.org/uniprot/P93836 P93836]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=4-hydroxyphenylpyruvate_dioxygenase}}
 
{{#set: common name=ORF}}
 
{{#set: common name=ORF}}
−
{{#set: ec number=EC-3.6.1.5}}
+
{{#set: ec number=EC-1.13.11.27}}
−
{{#set: gene associated=Tiso_gene_20236|Tiso_gene_12899}}
+
{{#set: gene associated=Tiso_gene_18977|Tiso_gene_18328|Tiso_gene_18976}}
−
{{#set: in pathway=PWY-7185|PWY-7177}}
+
{{#set: in pathway=PWY-1581|PWY-7432|TYRFUMCAT-PWY|PWY-1422}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=esiliculosus}}
+
{{#set: reconstruction source=synechocystis|esiliculosus|athaliana}}
−
{{#set: reconstruction category=manual}}
+
−
{{#set: reconstruction source=primary_network}}
+
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+
{{#set: reconstruction source=in-silico_annotation}}

Revision as of 17:00, 10 January 2018

Reaction 4-HYDROXYPHENYLPYRUVATE-DIOXYGENASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 4-hydroxyphenylpyruvate_dioxygenase
    • ORF
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-1581, plastoquinol-9 biosynthesis I: PWY-1581
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-7432, L-phenylalanine biosynthesis III (cytosolic, plants): PWY-7432
    • 3 reactions found over 4 reactions in the full pathway
  • TYRFUMCAT-PWY, L-tyrosine degradation I: TYRFUMCAT-PWY
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-1422, vitamin E biosynthesis (tocopherols): PWY-1422
    • 5 reactions found over 7 reactions in the full pathway

Reconstruction information

External links







Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_7800&oldid=15683"