Difference between revisions of "RXN-13697"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13697 RXN-13697] == * direction: ** REVERSIBLE * common name: ** aspartate_aminotransferase **...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-1401 RXN0-1401] == * direction: ** LEFT-TO-RIGHT * common name: ** thymidine_phosphorylase * e...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13697 RXN-13697] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-1401 RXN0-1401] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** aspartate_aminotransferase
+
** thymidine_phosphorylase
−
** aminotransferase
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.6.1.1 EC-2.6.1.1]
+
** [http://enzyme.expasy.org/EC/2.7.4.23 EC-2.7.4.23]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[L-ASPARTATE]][c] '''+''' 1 [[2-KETOGLUTARATE]][c] '''<=>''' 1 [[GLT]][c] '''+''' 1 [[OXALACETIC_ACID]][c]
+
** 1 [[ATP]][c] '''+''' 1 [[RIBOSE-15-BISPHOSPHATE]][c] '''=>''' 1 [[PRPP]][c] '''+''' 1 [[ADP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 L-aspartate[c] '''+''' 1 2-oxoglutarate[c] '''<=>''' 1 L-glutamate[c] '''+''' 1 oxaloacetate[c]
+
** 1 ATP[c] '''+''' 1 &alpha;-D-ribose 1,5-bisphosphate[c] '''=>''' 1 5-phospho-&alpha;-D-ribose 1-diphosphate[c] '''+''' 1 ADP[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_17718]]
+
* [[Tiso_gene_1011]]
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_12889]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[Tiso_gene_13538]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_6815]]
+
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
−
** EXPERIMENTAL_ANNOTATION
 
−
***EC-NUMBER
 
−
* [[Tiso_gene_15680]]
 
−
** [[pantograph]]-[[esiliculosus]]
 
−
* [[Tiso_gene_17809]]
 
−
** IN-SILICO_ANNOTATION
 
−
***AUTOMATED-NAME-MATCH
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7117]], C4 photosynthetic carbon assimilation cycle, PEPCK type: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7117 PWY-7117]
+
* [[PWY-7805]], aminomethylphosphonate degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7805 PWY-7805]
−
** '''7''' reactions found over '''10''' reactions in the full pathway
+
** '''2''' reactions found over '''8''' reactions in the full pathway
−
* [[PWY-7115]], C4 photosynthetic carbon assimilation cycle, NAD-ME type: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7115 PWY-7115]
+
* [[PWY0-661]], PRPP biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-661 PWY0-661]
−
** '''7''' reactions found over '''9''' reactions in the full pathway
+
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-7807]], glyphosate degradation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7807 PWY-7807]
 +
** '''2''' reactions found over '''7''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
 
−
** [[pantograph]]:
 
−
*** [[esiliculosus]]
 
 
* [[annotation]]:
 
* [[annotation]]:
 
** [[pathwaytools]]:
 
** [[pathwaytools]]:
−
*** [[experimental_annotation]]
 
 
*** [[in-silico_annotation]]
 
*** [[in-silico_annotation]]
 
== External links  ==
 
== External links  ==
−
{{#set: direction=REVERSIBLE}}
+
* RHEA:
−
{{#set: common name=aspartate_aminotransferase}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20109 20109]
−
{{#set: common name=aminotransferase}}
+
* LIGAND-RXN:
−
{{#set: ec number=EC-2.6.1.1}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R06836 R06836]
−
{{#set: gene associated=Tiso_gene_17718|Tiso_gene_12889|Tiso_gene_13538|Tiso_gene_6815|Tiso_gene_15680|Tiso_gene_17809}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: in pathway=PWY-7117|PWY-7115}}
+
{{#set: common name=thymidine_phosphorylase}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: ec number=EC-2.7.4.23}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: gene associated=Tiso_gene_1011}}
−
{{#set: reconstruction source=esiliculosus}}
+
{{#set: in pathway=PWY-7805|PWY0-661|PWY-7807}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+
{{#set: reconstruction source=in-silico_annotation}}

Revision as of 17:00, 10 January 2018

Reaction RXN0-1401

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • thymidine_phosphorylase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 ATP[c] + 1 α-D-ribose 1,5-bisphosphate[c] => 1 5-phospho-α-D-ribose 1-diphosphate[c] + 1 ADP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7805, aminomethylphosphonate degradation: PWY-7805
    • 2 reactions found over 8 reactions in the full pathway
  • PWY0-661, PRPP biosynthesis II: PWY0-661
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-7807, glyphosate degradation III: PWY-7807
    • 2 reactions found over 7 reactions in the full pathway

Reconstruction information

External links





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