Difference between revisions of "Tiso gene 12881"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.7.7.13-RXN 2.7.7.13-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.o...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXNARA-8002 RXNARA-8002] == * direction: ** LEFT-TO-RIGHT * Synonym(s): ** prephytoene-diphosphate...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.7.7.13-RXN 2.7.7.13-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXNARA-8002 RXNARA-8002] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* ec number:
 
−
** [http://enzyme.expasy.org/EC/2.7.7.13 EC-2.7.7.13]
 
 
* Synonym(s):
 
* Synonym(s):
 +
** prephytoene-diphosphate synthase
 +
** PSase
 +
** geranylgeranyl-diphosphate geranylgeranyltransferase
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[GTP]][c] '''+''' 1 [[MANNOSE-1P]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[GDP-MANNOSE]][c] '''+''' 1 [[PPI]][c]
+
** 1 [[CPD-464]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[CPD-12321]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 GTP[c] '''+''' 1 α-D-mannose 1-phosphate[c] '''+''' 1 H+[c] '''=>''' 1 GDP-α-D-mannose[c] '''+''' 1 diphosphate[c]
+
** 1 prephytoene diphosphate[c] '''=>''' 1 diphosphate[c] '''+''' 1 15-cis-phytoene[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_14704]]
+
* [[Tiso_gene_15914]]
−
** [[pantograph]]-[[synechocystis]]
+
** [[pantograph]]-[[esiliculosus]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-5659]], GDP-mannose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5659 PWY-5659]
+
* [[PWY-6287]], neurosporene biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6287 PWY-6287]
−
** '''3''' reactions found over '''4''' reactions in the full pathway
+
** '''4''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-882]], L-ascorbate biosynthesis I (L-galactose pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY-882 PWY-882]
+
* [[PWY-5942]], trans-lycopene biosynthesis I (bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5942 PWY-5942]
−
** '''6''' reactions found over '''8''' reactions in the full pathway
+
** '''2''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-6475]], trans-lycopene biosynthesis II (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6475 PWY-6475]
 +
** '''5''' reactions found over '''8''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* [[orthology]]:
 
* [[orthology]]:
 
** [[pantograph]]:
 
** [[pantograph]]:
−
*** [[synechocystis]]
+
*** [[esiliculosus]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15229 15229]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00885 R00885]
+
** [http://www.genome.jp/dbget-bin/www_bget?R07270 R07270]
−
* UNIPROT:
+
−
** [http://www.uniprot.org/uniprot/Q9TRF4 Q9TRF4]
+
−
** [http://www.uniprot.org/uniprot/Q59427 Q59427]
+
−
** [http://www.uniprot.org/uniprot/P41940 P41940]
+
−
** [http://www.uniprot.org/uniprot/O22287 O22287]
+
−
** [http://www.uniprot.org/uniprot/O74484 O74484]
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: ec number=EC-2.7.7.13}}
+
{{#set: common name=prephytoene-diphosphate synthase|PSase|geranylgeranyl-diphosphate geranylgeranyltransferase}}
−
{{#set: gene associated=Tiso_gene_14704}}
+
{{#set: gene associated=Tiso_gene_15914}}
−
{{#set: in pathway=PWY-5659|PWY-882}}
+
{{#set: in pathway=PWY-6287|PWY-5942|PWY-6475}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=synechocystis}}
+
{{#set: reconstruction source=esiliculosus}}

Revision as of 17:02, 10 January 2018

Reaction RXNARA-8002

  • direction:
    • LEFT-TO-RIGHT
  • Synonym(s):
    • prephytoene-diphosphate synthase
    • PSase
    • geranylgeranyl-diphosphate geranylgeranyltransferase

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 prephytoene diphosphate[c] => 1 diphosphate[c] + 1 15-cis-phytoene[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6287, neurosporene biosynthesis: PWY-6287
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-5942, trans-lycopene biosynthesis I (bacteria): PWY-5942
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-6475, trans-lycopene biosynthesis II (plants): PWY-6475
    • 5 reactions found over 8 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_12881&oldid=15870"