Difference between revisions of "RXN-14047"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=FADSYN-RXN FADSYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** fad_synthetase * ec numbe...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8642 RXN-8642] == * direction: ** REVERSIBLE * common name: ** ORF * Synonym(s): ** oxalsuccini...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=FADSYN-RXN FADSYN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8642 RXN-8642] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** fad_synthetase
+
** ORF
−
* ec number:
+
−
** [http://enzyme.expasy.org/EC/2.7.7.2 EC-2.7.7.2]
+
 
* Synonym(s):
 
* Synonym(s):
 +
** oxalsuccinic decarboxylase
 +
** isocitrate (NADP) dehydrogenase
 +
** isocitrate (nicotinamide adenine dinucleotide phosphate) dehydrogenase
 +
** NADP-specific isocitrate dehydrogenase
 +
** NADP-linked isocitrate dehydrogenase
 +
** NADP isocitric dehydrogenase
 +
** isocitrate dehydrogenase (NADP-dependent)
 +
** NADP-dependent isocitric dehydrogenase
 +
** triphosphopyridine nucleotide-linked isocitrate dehydrogenase-oxalosuccinate carboxylase
 +
** NADP+-linked isocitrate dehydrogenase
 +
** IDH (ambiguous)
 +
** dual-cofactor-specific isocitrate dehydrogenase
 +
** NADP+-ICDH
 +
** NADP+-IDH
 +
** IDP
 +
** IDP1
 +
** IDP2
 +
** IDP3
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[FMN]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[FAD]][c] '''+''' 1 [[PPI]][c]
+
** 1 [[OXALO-SUCCINATE]][c] '''+''' 1 [[PROTON]][c] '''<=>''' 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 FMN[c] '''+''' 1 ATP[c] '''+''' 1 H+[c] '''=>''' 1 FAD[c] '''+''' 1 diphosphate[c]
+
** 1 oxalosuccinate[c] '''+''' 1 H+[c] '''<=>''' 1 2-oxoglutarate[c] '''+''' 1 CO2[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_5393]]
+
* [[Tiso_gene_18262]]
−
** IN-SILICO_ANNOTATION
+
** EXPERIMENTAL_ANNOTATION
−
***AUTOMATED-NAME-MATCH
+
***EC-NUMBER
 
** [[pantograph]]-[[esiliculosus]]
 
** [[pantograph]]-[[esiliculosus]]
−
** [[pantograph]]-[[creinhardtii]]
+
* [[Tiso_gene_10809]]
−
* [[Tiso_gene_7479]]
+
** IN-SILICO_ANNOTATION
−
** [[pantograph]]-[[synechocystis]]
+
***EC-NUMBER
−
* [[Tiso_gene_5392]]
+
** EXPERIMENTAL_ANNOTATION
−
** [[pantograph]]-[[creinhardtii]]
+
***EC-NUMBER
−
* [[Tiso_gene_1086]]
+
−
** [[pantograph]]-[[synechocystis]]
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY66-366]], flavin biosynthesis IV (mammalian): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-366 PWY66-366]
 
−
** '''2''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-6167]], flavin biosynthesis II (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6167 PWY-6167]
 
−
** '''4''' reactions found over '''10''' reactions in the full pathway
 
−
* [[PWY-6168]], flavin biosynthesis III (fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6168 PWY-6168]
 
−
** '''6''' reactions found over '''9''' reactions in the full pathway
 
−
* [[RIBOSYN2-PWY]], flavin biosynthesis I (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=RIBOSYN2-PWY RIBOSYN2-PWY]
 
−
** '''7''' reactions found over '''9''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* [[orthology]]:
 
* [[orthology]]:
 
** [[pantograph]]:
 
** [[pantograph]]:
−
*** [[creinhardtii]]
 
−
*** [[synechocystis]]
 
 
*** [[esiliculosus]]
 
*** [[esiliculosus]]
 
* [[annotation]]:
 
* [[annotation]]:
 
** [[pathwaytools]]:
 
** [[pathwaytools]]:
 +
*** [[experimental_annotation]]
 
*** [[in-silico_annotation]]
 
*** [[in-silico_annotation]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17237 17237]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00161 R00161]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00268 R00268]
−
* UNIPROT:
+
{{#set: direction=REVERSIBLE}}
−
** [http://www.uniprot.org/uniprot/Q9JVY5 Q9JVY5]
+
{{#set: common name=ORF}}
−
** [http://www.uniprot.org/uniprot/Q9PHS7 Q9PHS7]
+
{{#set: common name=oxalsuccinic decarboxylase|isocitrate (NADP) dehydrogenase|isocitrate (nicotinamide adenine dinucleotide phosphate) dehydrogenase|NADP-specific isocitrate dehydrogenase|NADP-linked isocitrate dehydrogenase|NADP isocitric dehydrogenase|isocitrate dehydrogenase (NADP-dependent)|NADP-dependent isocitric dehydrogenase|triphosphopyridine nucleotide-linked isocitrate dehydrogenase-oxalosuccinate carboxylase|NADP+-linked isocitrate dehydrogenase|IDH (ambiguous)|dual-cofactor-specific isocitrate dehydrogenase|NADP+-ICDH|NADP+-IDH|IDP|IDP1|IDP2|IDP3}}
−
** [http://www.uniprot.org/uniprot/Q59263 Q59263]
+
{{#set: gene associated=Tiso_gene_18262|Tiso_gene_10809}}
−
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: in pathway=}}
−
{{#set: common name=fad_synthetase}}
+
−
{{#set: ec number=EC-2.7.7.2}}
+
−
{{#set: gene associated=Tiso_gene_5393|Tiso_gene_7479|Tiso_gene_5392|Tiso_gene_1086}}
+
−
{{#set: in pathway=PWY66-366|PWY-6167|PWY-6168|RIBOSYN2-PWY}}
+
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=creinhardtii|synechocystis|esiliculosus}}
+
{{#set: reconstruction source=esiliculosus}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction source=in-silico_annotation}}
+
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}

Revision as of 15:33, 10 January 2018

Reaction RXN-8642

  • direction:
    • REVERSIBLE
  • common name:
    • ORF
  • Synonym(s):
    • oxalsuccinic decarboxylase
    • isocitrate (NADP) dehydrogenase
    • isocitrate (nicotinamide adenine dinucleotide phosphate) dehydrogenase
    • NADP-specific isocitrate dehydrogenase
    • NADP-linked isocitrate dehydrogenase
    • NADP isocitric dehydrogenase
    • isocitrate dehydrogenase (NADP-dependent)
    • NADP-dependent isocitric dehydrogenase
    • triphosphopyridine nucleotide-linked isocitrate dehydrogenase-oxalosuccinate carboxylase
    • NADP+-linked isocitrate dehydrogenase
    • IDH (ambiguous)
    • dual-cofactor-specific isocitrate dehydrogenase
    • NADP+-ICDH
    • NADP+-IDH
    • IDP
    • IDP1
    • IDP2
    • IDP3

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links






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