Difference between revisions of "PWY-5410"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=7KAPSYN-RXN 7KAPSYN-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=UDPGLUCEPIM-RXN UDPGLUCEPIM-RXN] == * direction: ** REVERSIBLE * common name: ** udp-glucose_4-epim...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=7KAPSYN-RXN 7KAPSYN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=UDPGLUCEPIM-RXN UDPGLUCEPIM-RXN] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 +
* common name:
 +
** udp-glucose_4-epimerase_5
 +
** udp-glucose_4-epimerase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.3.1.47 EC-2.3.1.47]
+
** [http://enzyme.expasy.org/EC/5.1.3.2 EC-5.1.3.2]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[L-ALPHA-ALANINE]][c] '''+''' 1 [[CPD-558]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[8-AMINO-7-OXONONANOATE]][c]
+
** 1 [[CPD-12575]][c] '''<=>''' 1 [[CPD-14553]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 L-alanine[c] '''+''' 1 pimeloyl-CoA[c] '''+''' 1 H+[c] '''=>''' 1 CO2[c] '''+''' 1 coenzyme A[c] '''+''' 1 8-amino-7-oxononanoate[c]
+
** 1 UDP-&alpha;-D-glucose[c] '''<=>''' 1 UDP-&alpha;-D-galactose[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_3555]]
+
* [[Tiso_gene_3236]]
 +
** IN-SILICO_ANNOTATION
 +
***AUTOMATED-NAME-MATCH
 +
** [[pantograph]]-[[synechocystis]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_9823]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 
** [[pantograph]]-[[athaliana]]
 
** [[pantograph]]-[[athaliana]]
 +
** [[pantograph]]-[[synechocystis]]
 
** [[pantograph]]-[[esiliculosus]]
 
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_10797]]
 +
** [[pantograph]]-[[athaliana]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_15395]]
 +
** [[pantograph]]-[[athaliana]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-6578]], 8-amino-7-oxononanoate biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6578 PWY-6578]
+
* [[PWY-7344]], UDP-D-galactose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7344 PWY-7344]
−
** '''1''' reactions found over '''2''' reactions in the full pathway
+
** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[PWY-6397]], mycolyl-arabinogalactan-peptidoglycan complex biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6397 PWY-6397]
 +
** '''2''' reactions found over '''17''' reactions in the full pathway
 +
* [[PWY-6317]], D-galactose degradation I (Leloir pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6317 PWY-6317]
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-6527]], stachyose degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6527 PWY-6527]
 +
** '''7''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7328]], superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7328 PWY-7328]
 +
** '''5''' reactions found over '''10''' reactions in the full pathway
 +
* [[COLANSYN-PWY]], colanic acid building blocks biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=COLANSYN-PWY COLANSYN-PWY]
 +
** '''5''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY66-422]], D-galactose degradation V (Leloir pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-422 PWY66-422]
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-3821]], D-galactose degradation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3821 PWY-3821]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* [[orthology]]:
 
* [[orthology]]:
 
** [[pantograph]]:
 
** [[pantograph]]:
 +
*** [[synechocystis]]
 
*** [[athaliana]]
 
*** [[athaliana]]
 
*** [[esiliculosus]]
 
*** [[esiliculosus]]
 +
* [[annotation]]:
 +
** [[pathwaytools]]:
 +
*** [[experimental_annotation]]
 +
*** [[in-silico_annotation]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20712 20712]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22168 22168]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03210 R03210]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00291 R00291]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q58694 Q58694]
+
** [http://www.uniprot.org/uniprot/P35673 P35673]
−
** [http://www.uniprot.org/uniprot/O84782 O84782]
+
** [http://www.uniprot.org/uniprot/P22715 P22715]
−
** [http://www.uniprot.org/uniprot/Q9Z6Y3 Q9Z6Y3]
+
** [http://www.uniprot.org/uniprot/P21977 P21977]
−
** [http://www.uniprot.org/uniprot/P0A4X4 P0A4X4]
+
** [http://www.uniprot.org/uniprot/P24325 P24325]
−
** [http://www.uniprot.org/uniprot/Q9K0U0 Q9K0U0]
+
** [http://www.uniprot.org/uniprot/Q9CE66 Q9CE66]
−
** [http://www.uniprot.org/uniprot/Q9PLE6 Q9PLE6]
+
** [http://www.uniprot.org/uniprot/Q57664 Q57664]
−
** [http://www.uniprot.org/uniprot/P44422 P44422]
+
** [http://www.uniprot.org/uniprot/P55180 P55180]
−
** [http://www.uniprot.org/uniprot/O25320 O25320]
+
** [http://www.uniprot.org/uniprot/Q9PNG3 Q9PNG3]
−
** [http://www.uniprot.org/uniprot/P53556 P53556]
+
** [http://www.uniprot.org/uniprot/P56997 P56997]
−
** [http://www.uniprot.org/uniprot/Q9PIJ3 Q9PIJ3]
+
** [http://www.uniprot.org/uniprot/Q59083 Q59083]
−
** [http://www.uniprot.org/uniprot/O66875 O66875]
+
** [http://www.uniprot.org/uniprot/Q44016 Q44016]
−
** [http://www.uniprot.org/uniprot/Q9ZLN3 Q9ZLN3]
+
** [http://www.uniprot.org/uniprot/Q45291 Q45291]
−
** [http://www.uniprot.org/uniprot/Q9Z6L6 Q9Z6L6]
+
** [http://www.uniprot.org/uniprot/P96995 P96995]
−
** [http://www.uniprot.org/uniprot/Q9JT28 Q9JT28]
+
** [http://www.uniprot.org/uniprot/P45602 P45602]
−
** [http://www.uniprot.org/uniprot/P22806 P22806]
+
** [http://www.uniprot.org/uniprot/P18645 P18645]
−
** [http://www.uniprot.org/uniprot/P45487 P45487]
+
** [http://www.uniprot.org/uniprot/P26503 P26503]
−
** [http://www.uniprot.org/uniprot/P74770 P74770]
+
** [http://www.uniprot.org/uniprot/P40801 P40801]
−
** [http://www.uniprot.org/uniprot/P12998 P12998]
+
** [http://www.uniprot.org/uniprot/Q05026 Q05026]
−
{{#set: direction=LEFT-TO-RIGHT}}
+
** [http://www.uniprot.org/uniprot/P56985 P56985]
−
{{#set: ec number=EC-2.3.1.47}}
+
** [http://www.uniprot.org/uniprot/Q51148 Q51148]
−
{{#set: gene associated=Tiso_gene_3555}}
+
** [http://www.uniprot.org/uniprot/Q56093 Q56093]
−
{{#set: in pathway=PWY-6578}}
+
** [http://www.uniprot.org/uniprot/Q42605 Q42605]
 +
** [http://www.uniprot.org/uniprot/Q60109 Q60109]
 +
** [http://www.uniprot.org/uniprot/P72903 P72903]
 +
** [http://www.uniprot.org/uniprot/P72915 P72915]
 +
** [http://www.uniprot.org/uniprot/O66256 O66256]
 +
** [http://www.uniprot.org/uniprot/O64749 O64749]
 +
** [http://www.uniprot.org/uniprot/Q9SN58 Q9SN58]
 +
** [http://www.uniprot.org/uniprot/Q8VZ26 Q8VZ26]
 +
** [http://www.uniprot.org/uniprot/Q43070 Q43070]
 +
** [http://www.uniprot.org/uniprot/Q9T0A7 Q9T0A7]
 +
** [http://www.uniprot.org/uniprot/O65780 O65780]
 +
** [http://www.uniprot.org/uniprot/O65781 O65781]
 +
** [http://www.uniprot.org/uniprot/Q9RMC0 Q9RMC0]
 +
** [http://www.uniprot.org/uniprot/P04397 P04397]
 +
** [http://www.uniprot.org/uniprot/P09147 P09147]
 +
** [http://www.uniprot.org/uniprot/P13226 P13226]
 +
** [http://www.uniprot.org/uniprot/P09609 P09609]
 +
{{#set: direction=REVERSIBLE}}
 +
{{#set: common name=udp-glucose_4-epimerase_5}}
 +
{{#set: common name=udp-glucose_4-epimerase}}
 +
{{#set: ec number=EC-5.1.3.2}}
 +
{{#set: gene associated=Tiso_gene_3236|Tiso_gene_9823|Tiso_gene_10797|Tiso_gene_15395}}
 +
{{#set: in pathway=PWY-7344|PWY-6397|PWY-6317|PWY-6527|PWY-7328|COLANSYN-PWY|PWY66-422|PWY-3821}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=athaliana|esiliculosus}}
+
{{#set: reconstruction source=synechocystis|athaliana|esiliculosus}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}
 +
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}

Revision as of 15:43, 10 January 2018

Reaction UDPGLUCEPIM-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • udp-glucose_4-epimerase_5
    • udp-glucose_4-epimerase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 UDP-α-D-glucose[c] <=> 1 UDP-α-D-galactose[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7344, UDP-D-galactose biosynthesis: PWY-7344
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-6397, mycolyl-arabinogalactan-peptidoglycan complex biosynthesis: PWY-6397
    • 2 reactions found over 17 reactions in the full pathway
  • PWY-6317, D-galactose degradation I (Leloir pathway): PWY-6317
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-6527, stachyose degradation: PWY-6527
    • 7 reactions found over 7 reactions in the full pathway
  • PWY-7328, superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis: PWY-7328
    • 5 reactions found over 10 reactions in the full pathway
  • COLANSYN-PWY, colanic acid building blocks biosynthesis: COLANSYN-PWY
    • 5 reactions found over 11 reactions in the full pathway
  • PWY66-422, D-galactose degradation V (Leloir pathway): PWY66-422
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-3821, D-galactose degradation III: PWY-3821
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links







Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-5410&oldid=10164"