Difference between revisions of "Tiso gene 8464"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=THYMIDYLATESYN-RXN THYMIDYLATESYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** thymidyla...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLYCERATE-DEHYDROGENASE-RXN GLYCERATE-DEHYDROGENASE-RXN] == * direction: ** LEFT-TO-RIGHT * ec numb...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=THYMIDYLATESYN-RXN THYMIDYLATESYN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLYCERATE-DEHYDROGENASE-RXN GLYCERATE-DEHYDROGENASE-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** thymidylate_synthase
 
−
** ORF
 
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.1.1.45 EC-2.1.1.45]
+
** [http://enzyme.expasy.org/EC/1.1.1.29 EC-1.1.1.29]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[METHYLENE-THF-GLU-N]][c] '''+''' 1 [[DUMP]][c] '''=>''' 1 [[DIHYDROFOLATE-GLU-N]][c] '''+''' 1 [[TMP]][c]
+
** 1 [[NADH]][c] '''+''' 1 [[OH-PYR]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[NAD]][c] '''+''' 1 [[GLYCERATE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 a 5,10-methylene-tetrahydrofolate[c] '''+''' 1 dUMP[c] '''=>''' 1 a 7,8-dihydrofolate[c] '''+''' 1 dTMP[c]
+
** 1 NADH[c] '''+''' 1 hydroxypyruvate[c] '''+''' 1 H+[c] '''=>''' 1 NAD+[c] '''+''' 1 D-glycerate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
−
Genes have been associated with this reaction based on different elements listed below.
 
−
* [[Tiso_gene_7708]]
 
−
** IN-SILICO_ANNOTATION
 
−
***EC-NUMBER
 
−
* [[Tiso_gene_18478]]
 
−
** IN-SILICO_ANNOTATION
 
−
***EC-NUMBER
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7210]], pyrimidine deoxyribonucleotides biosynthesis from CTP: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7210 PWY-7210]
+
* [[PWY-181]], photorespiration: [http://metacyc.org/META/NEW-IMAGE?object=PWY-181 PWY-181]
−
** '''8''' reactions found over '''8''' reactions in the full pathway
+
** '''5''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-7198]], pyrimidine deoxyribonucleotides de novo biosynthesis IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7198 PWY-7198]
+
−
** '''6''' reactions found over '''7''' reactions in the full pathway
+
−
* [[PWY-7199]], pyrimidine deoxyribonucleosides salvage: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7199 PWY-7199]
+
−
** '''1''' reactions found over '''5''' reactions in the full pathway
+
−
* [[PWY-3841]], folate transformations II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3841 PWY-3841]
+
−
** '''9''' reactions found over '''11''' reactions in the full pathway
+
−
* [[PWY-7184]], pyrimidine deoxyribonucleotides de novo biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7184 PWY-7184]
+
−
** '''9''' reactions found over '''9''' reactions in the full pathway
+
−
* [[PWY-7187]], pyrimidine deoxyribonucleotides de novo biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7187 PWY-7187]
+
−
** '''4''' reactions found over '''7''' reactions in the full pathway
+
−
* [[PWY0-166]], superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-166 PWY0-166]
+
−
** '''12''' reactions found over '''17''' reactions in the full pathway
+
−
* [[1CMET2-PWY]], N10-formyl-tetrahydrofolate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=1CMET2-PWY 1CMET2-PWY]
+
−
** '''7''' reactions found over '''9''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* [[manual]]:
 
* [[manual]]:
 
** [[primary_network]]
 
** [[primary_network]]
−
* [[annotation]]:
 
−
** [[pathwaytools]]:
 
−
*** [[in-silico_annotation]]
 
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12104 12104]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17905 17905]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R02101 R02101]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01388 R01388]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P19368 P19368]
+
** [http://www.uniprot.org/uniprot/P13443 P13443]
−
** [http://www.uniprot.org/uniprot/Q07422 Q07422]
+
** [http://www.uniprot.org/uniprot/Q9JWP1 Q9JWP1]
−
** [http://www.uniprot.org/uniprot/P47469 P47469]
+
** [http://www.uniprot.org/uniprot/Q42708 Q42708]
−
** [http://www.uniprot.org/uniprot/Q9JT57 Q9JT57]
+
** [http://www.uniprot.org/uniprot/Q42709 Q42709]
−
** [http://www.uniprot.org/uniprot/P42326 P42326]
+
−
** [http://www.uniprot.org/uniprot/O02604 O02604]
+
−
** [http://www.uniprot.org/uniprot/P07382 P07382]
+
−
** [http://www.uniprot.org/uniprot/P16126 P16126]
+
−
** [http://www.uniprot.org/uniprot/P13922 P13922]
+
−
** [http://www.uniprot.org/uniprot/P20712 P20712]
+
−
** [http://www.uniprot.org/uniprot/P11044 P11044]
+
−
** [http://www.uniprot.org/uniprot/P45350 P45350]
+
−
** [http://www.uniprot.org/uniprot/P45352 P45352]
+
−
** [http://www.uniprot.org/uniprot/P51820 P51820]
+
−
** [http://www.uniprot.org/uniprot/P0C0M4 P0C0M4]
+
−
** [http://www.uniprot.org/uniprot/Q27828 Q27828]
+
−
** [http://www.uniprot.org/uniprot/P09249 P09249]
+
−
** [http://www.uniprot.org/uniprot/P12462 P12462]
+
−
** [http://www.uniprot.org/uniprot/P07606 P07606]
+
−
** [http://www.uniprot.org/uniprot/P00471 P00471]
+
−
** [http://www.uniprot.org/uniprot/P0A884 P0A884]
+
−
** [http://www.uniprot.org/uniprot/P00469 P00469]
+
−
** [http://www.uniprot.org/uniprot/O81395 O81395]
+
−
** [http://www.uniprot.org/uniprot/Q05763 Q05763]
+
−
** [http://www.uniprot.org/uniprot/Q39687 Q39687]
+
−
** [http://www.uniprot.org/uniprot/Q9YTJ6 Q9YTJ6]
+
−
** [http://www.uniprot.org/uniprot/P06785 P06785]
+
−
** [http://www.uniprot.org/uniprot/P04818 P04818]
+
−
** [http://www.uniprot.org/uniprot/P07607 P07607]
+
−
** [http://www.uniprot.org/uniprot/P13100 P13100]
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=thymidylate_synthase}}
+
{{#set: ec number=EC-1.1.1.29}}
−
{{#set: common name=ORF}}
+
{{#set: in pathway=PWY-181}}
−
{{#set: ec number=EC-2.1.1.45}}
+
−
{{#set: gene associated=Tiso_gene_7708|Tiso_gene_18478}}
+
−
{{#set: in pathway=PWY-7210|PWY-7198|PWY-7199|PWY-3841|PWY-7184|PWY-7187|PWY0-166|1CMET2-PWY}}
+
 
{{#set: reconstruction category=manual}}
 
{{#set: reconstruction category=manual}}
 
{{#set: reconstruction source=primary_network}}
 
{{#set: reconstruction source=primary_network}}
−
{{#set: reconstruction category=annotation}}
 
−
{{#set: reconstruction tool=pathwaytools}}
 
−
{{#set: reconstruction source=in-silico_annotation}}
 

Revision as of 17:09, 10 January 2018

Reaction GLYCERATE-DEHYDROGENASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 NADH[c] + 1 hydroxypyruvate[c] + 1 H+[c] => 1 NAD+[c] + 1 D-glycerate[c]

Genes associated with this reaction

Pathways

  • PWY-181, photorespiration: PWY-181
    • 5 reactions found over 9 reactions in the full pathway

Reconstruction information

External links



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