Difference between revisions of "CPD-3617"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1G-509 RXN1G-509] == * direction: ** LEFT-TO-RIGHT * common name: ** trans-delta2-cis,cis-9,21-C...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN490-3641 RXN490-3641] == * direction: ** LEFT-TO-RIGHT * common name: ** proline,2-oxoglutarate-...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1G-509 RXN1G-509] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN490-3641 RXN490-3641] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** trans-delta2-cis,cis-9,21-C40:3-[acyl-carrier protein] reductase
+
** proline,2-oxoglutarate-4-dioxygenase (cis-4-hydroxy-L-proline)
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.3.1.M4 EC-1.3.1.M4]
+
** [http://enzyme.expasy.org/EC/1.14.11 EC-1.14.11]
 
* Synonym(s):
 
* Synonym(s):
 +
** prolyl hydroxylase
 +
** prolyl 4-hydroxylase
 +
** proline,2-oxoglutarate 4-dioxygenase
 +
** proline hydroxylase
 +
** protocollagen hydroxylase
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[NADH]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[trans-D2-cis-cis-D9-21-C40-3-ACPs]][c] '''=>''' 1 [[cis-cis-D9-21-C40-2-ACPs]][c] '''+''' 1 [[NAD]][c]
+
** 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[PRO]][c] '''+''' 1 [[2-KETOGLUTARATE]][c] '''=>''' 1 [[4-HYDROXY-L-PROLINE]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[SUC]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 NADH[c] '''+''' 1 H+[c] '''+''' 1 a trans-delta2-cis,cis-9,21-C40:3-[acp][c] '''=>''' 1 a cis,cis-delta9,21-C40:2-[acp][c] '''+''' 1 NAD+[c]
+
** 1 oxygen[c] '''+''' 1 L-proline[c] '''+''' 1 2-oxoglutarate[c] '''=>''' 1 trans-4-hydroxy-L-proline[c] '''+''' 1 CO2[c] '''+''' 1 succinate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_10778]]
+
* [[Tiso_gene_2158]]
 
** [[pantograph]]-[[esiliculosus]]
 
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_17593]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_18145]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_18933]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_6296]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_2280]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_19638]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_18208]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_292]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_9873]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_18235]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_1468]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_15594]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_9035]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_15328]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_16842]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_3021]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_9227]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_16122]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_17919]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_17823]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_18689]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_8652]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_9455]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_9165]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_9636]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_13008]]
 +
** [[pantograph]]-[[athaliana]]
 +
** [[pantograph]]-[[creinhardtii]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWYG-321]], mycolate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWYG-321 PWYG-321]
 
−
** '''86''' reactions found over '''182''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* [[orthology]]:
 
* [[orthology]]:
 
** [[pantograph]]:
 
** [[pantograph]]:
 +
*** [[creinhardtii]]
 +
*** [[athaliana]]
 
*** [[esiliculosus]]
 
*** [[esiliculosus]]
 +
* [[manual]]:
 +
** [[primary_network]]
 
== External links  ==
 
== External links  ==
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R01252 R01252]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=trans-delta2-cis,cis-9,21-C40:3-[acyl-carrier protein] reductase}}
+
{{#set: common name=proline,2-oxoglutarate-4-dioxygenase (cis-4-hydroxy-L-proline)}}
−
{{#set: ec number=EC-1.3.1.M4}}
+
{{#set: ec number=EC-1.14.11}}
−
{{#set: gene associated=Tiso_gene_10778}}
+
{{#set: common name=prolyl hydroxylase|prolyl 4-hydroxylase|proline,2-oxoglutarate 4-dioxygenase|proline hydroxylase|protocollagen hydroxylase}}
−
{{#set: in pathway=PWYG-321}}
+
{{#set: gene associated=Tiso_gene_2158|Tiso_gene_17593|Tiso_gene_18145|Tiso_gene_18933|Tiso_gene_6296|Tiso_gene_2280|Tiso_gene_19638|Tiso_gene_18208|Tiso_gene_292|Tiso_gene_9873|Tiso_gene_18235|Tiso_gene_1468|Tiso_gene_15594|Tiso_gene_9035|Tiso_gene_15328|Tiso_gene_16842|Tiso_gene_3021|Tiso_gene_9227|Tiso_gene_16122|Tiso_gene_17919|Tiso_gene_17823|Tiso_gene_18689|Tiso_gene_8652|Tiso_gene_9455|Tiso_gene_9165|Tiso_gene_9636|Tiso_gene_13008}}
 +
{{#set: in pathway=}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=esiliculosus}}
+
{{#set: reconstruction source=creinhardtii|athaliana|esiliculosus}}
 +
{{#set: reconstruction category=manual}}
 +
{{#set: reconstruction source=primary_network}}

Revision as of 17:09, 10 January 2018

Reaction RXN490-3641

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • proline,2-oxoglutarate-4-dioxygenase (cis-4-hydroxy-L-proline)
  • ec number:
  • Synonym(s):
    • prolyl hydroxylase
    • prolyl 4-hydroxylase
    • proline,2-oxoglutarate 4-dioxygenase
    • proline hydroxylase
    • protocollagen hydroxylase

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links






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