Difference between revisions of "HOMO-I-CIT"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-302 CPD-302] == * smiles: ** C(C(=O)[O-])C([N+])C(=O)[O-] * inchi key: ** InChIKey=CKLJMWTZ...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PGLYCDEHYDROG-RXN PGLYCDEHYDROG-RXN] == * direction: ** REVERSIBLE * common name: ** d-3-phosphogly...")
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-302 CPD-302] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PGLYCDEHYDROG-RXN PGLYCDEHYDROG-RXN] ==
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* smiles:
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* direction:
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** C(C(=O)[O-])C([N+])C(=O)[O-]
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** REVERSIBLE
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* inchi key:
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** InChIKey=CKLJMWTZIZZHCS-UWTATZPHSA-M
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* common name:
 
* common name:
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** D-aspartate
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** d-3-phosphoglycerate_dehydrogenase
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* molecular weight:
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** ORF
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** 132.096   
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* ec number:
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** [http://enzyme.expasy.org/EC/1.1.1.95 EC-1.1.1.95]
 
* Synonym(s):
 
* Synonym(s):
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** D-aspartic acid
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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== Reaction(s) known to produce the compound ==
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* With identifiers:
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== Reaction(s) of unknown directionality ==
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** 1 [[G3P]][c] '''+''' 1 [[NAD]][c] '''<=>''' 1 [[3-P-HYDROXYPYRUVATE]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c]
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* [[ASPARTATE-RACEMASE-RXN]]
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* With common name(s):
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** 1 3-phospho-D-glycerate[c] '''+''' 1 NAD+[c] '''<=>''' 1 3-phospho-hydroxypyruvate[c] '''+''' 1 NADH[c] '''+''' 1 H+[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_6223]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_15687]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[synechocystis]]
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** [[pantograph]]-[[esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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* [[Tiso_gene_17123]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_18904]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_15686]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_6224]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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== Pathways  ==
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* [[SERSYN-PWY]], L-serine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=SERSYN-PWY SERSYN-PWY]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[creinhardtii]]
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*** [[synechocystis]]
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*** [[esiliculosus]]
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*** [[athaliana]]
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* [[manual]]:
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** [[primary_network]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
 
== External links  ==
 
== External links  ==
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* CAS : 1783-96-6
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* RHEA:
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* PUBCHEM:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12641 12641]
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=5460295 5460295]
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* LIGAND-RXN:
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* HMDB : HMDB06483
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** [http://www.genome.jp/dbget-bin/www_bget?R01513 R01513]
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* LIGAND-CPD:
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* UNIPROT:
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** [http://www.genome.jp/dbget-bin/www_bget?C00402 C00402]
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** [http://www.uniprot.org/uniprot/Q58424 Q58424]
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* CHEMSPIDER:
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** [http://www.uniprot.org/uniprot/P43885 P43885]
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** [http://www.chemspider.com/Chemical-Structure.4573880.html 4573880]
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** [http://www.uniprot.org/uniprot/P35136 P35136]
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* CHEBI:
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** [http://www.uniprot.org/uniprot/Q9PP40 Q9PP40]
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=29990 29990]
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** [http://www.uniprot.org/uniprot/P0A9T0 P0A9T0]
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* METABOLIGHTS : MTBLC29990
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** [http://www.uniprot.org/uniprot/P40510 P40510]
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{{#set: smiles=C(C(=O)[O-])C([N+])C(=O)[O-]}}
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** [http://www.uniprot.org/uniprot/P40054 P40054]
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{{#set: inchi key=InChIKey=CKLJMWTZIZZHCS-UWTATZPHSA-M}}
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** [http://www.uniprot.org/uniprot/O49485 O49485]
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{{#set: common name=D-aspartate}}
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** [http://www.uniprot.org/uniprot/P87228 P87228]
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{{#set: molecular weight=132.096    }}
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** [http://www.uniprot.org/uniprot/O04130 O04130]
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{{#set: common name=D-aspartic acid}}
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{{#set: direction=REVERSIBLE}}
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{{#set: consumed or produced by=ASPARTATE-RACEMASE-RXN}}
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{{#set: common name=d-3-phosphoglycerate_dehydrogenase}}
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{{#set: common name=ORF}}
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{{#set: ec number=EC-1.1.1.95}}
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{{#set: gene associated=Tiso_gene_6223|Tiso_gene_15687|Tiso_gene_17123|Tiso_gene_18904|Tiso_gene_15686|Tiso_gene_6224}}
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{{#set: in pathway=SERSYN-PWY}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=creinhardtii|synechocystis|esiliculosus|athaliana}}
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{{#set: reconstruction category=manual}}
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{{#set: reconstruction source=primary_network}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}

Revision as of 17:25, 10 January 2018

Reaction PGLYCDEHYDROG-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • d-3-phosphoglycerate_dehydrogenase
    • ORF
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 3-phospho-D-glycerate[c] + 1 NAD+[c] <=> 1 3-phospho-hydroxypyruvate[c] + 1 NADH[c] + 1 H+[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • SERSYN-PWY, L-serine biosynthesis: SERSYN-PWY
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links








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