Difference between revisions of "G3P"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PYRIDOXKIN-RXN PYRIDOXKIN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** pyridoxal_kinase...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIHYDROOROT-RXN DIHYDROOROT-RXN] == * direction: ** REVERSIBLE * common name: ** ORF * ec number: *...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PYRIDOXKIN-RXN PYRIDOXKIN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIHYDROOROT-RXN DIHYDROOROT-RXN] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** pyridoxal_kinase
+
** ORF
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.7.1.35 EC-2.7.1.35]
+
** [http://enzyme.expasy.org/EC/3.5.2.3 EC-3.5.2.3]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[ATP]][c] '''+''' 1 [[PYRIDOXAL]][c] '''=>''' 1 [[PYRIDOXAL_PHOSPHATE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[ADP]][c]
+
** 1 [[WATER]][c] '''+''' 1 [[DI-H-OROTATE]][c] '''<=>''' 1 [[CARBAMYUL-L-ASPARTATE]][c] '''+''' 1 [[PROTON]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 ATP[c] '''+''' 1 pyridoxal[c] '''=>''' 1 pyridoxal 5'-phosphate[c] '''+''' 1 H+[c] '''+''' 1 ADP[c]
+
** 1 H2O[c] '''+''' 1 (S)-dihydroorotate[c] '''<=>''' 1 N-carbamoyl-L-aspartate[c] '''+''' 1 H+[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_6106]]
+
* [[Tiso_gene_15379]]
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
−
***AUTOMATED-NAME-MATCH
+
***EC-NUMBER
−
** [[pantograph]]-[[athaliana]]
+
** EXPERIMENTAL_ANNOTATION
−
** [[pantograph]]-[[esiliculosus]]
+
***EC-NUMBER
 +
** [[pantograph]]-[[synechocystis]]
 
** [[pantograph]]-[[creinhardtii]]
 
** [[pantograph]]-[[creinhardtii]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7204]], pyridoxal 5'-phosphate salvage II (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7204 PWY-7204]
+
* [[PWY-7790]], UMP biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7790 PWY-7790]
−
** '''8''' reactions found over '''9''' reactions in the full pathway
+
** '''6''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY-7282]], 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7282 PWY-7282]
+
* [[PWY-7791]], UMP biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7791 PWY-7791]
−
** '''6''' reactions found over '''9''' reactions in the full pathway
+
** '''5''' reactions found over '''6''' reactions in the full pathway
−
* [[PLPSAL-PWY]], pyridoxal 5'-phosphate salvage I: [http://metacyc.org/META/NEW-IMAGE?object=PLPSAL-PWY PLPSAL-PWY]
+
* [[PWY-5686]], UMP biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5686 PWY-5686]
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
** '''6''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* [[orthology]]:
 
* [[orthology]]:
 
** [[pantograph]]:
 
** [[pantograph]]:
 
*** [[creinhardtii]]
 
*** [[creinhardtii]]
−
*** [[esiliculosus]]
+
*** [[synechocystis]]
−
*** [[athaliana]]
+
* [[manual]]:
 +
** [[primary_network]]
 
* [[annotation]]:
 
* [[annotation]]:
 
** [[pathwaytools]]:
 
** [[pathwaytools]]:
 +
*** [[experimental_annotation]]
 
*** [[in-silico_annotation]]
 
*** [[in-silico_annotation]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10224 10224]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24296 24296]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00174 R00174]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01993 R01993]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q7M2L1 Q7M2L1]
+
** [http://www.uniprot.org/uniprot/P08955 P08955]
−
** [http://www.uniprot.org/uniprot/P44690 P44690]
+
** [http://www.uniprot.org/uniprot/P27708 P27708]
−
** [http://www.uniprot.org/uniprot/P77150 P77150]
+
** [http://www.uniprot.org/uniprot/Q91437 Q91437]
−
{{#set: direction=LEFT-TO-RIGHT}}
+
** [http://www.uniprot.org/uniprot/Q58885 Q58885]
−
{{#set: common name=pyridoxal_kinase}}
+
** [http://www.uniprot.org/uniprot/Q9PIN6 Q9PIN6]
−
{{#set: ec number=EC-2.7.1.35}}
+
** [http://www.uniprot.org/uniprot/P25995 P25995]
−
{{#set: gene associated=Tiso_gene_6106}}
+
** [http://www.uniprot.org/uniprot/P20051 P20051]
−
{{#set: in pathway=PWY-7204|PWY-7282|PLPSAL-PWY}}
+
** [http://www.uniprot.org/uniprot/P06204 P06204]
 +
** [http://www.uniprot.org/uniprot/P05020 P05020]
 +
** [http://www.uniprot.org/uniprot/P31301 P31301]
 +
** [http://www.uniprot.org/uniprot/Q9PNA0 Q9PNA0]
 +
** [http://www.uniprot.org/uniprot/Q9JVD6 Q9JVD6]
 +
** [http://www.uniprot.org/uniprot/P46538 P46538]
 +
** [http://www.uniprot.org/uniprot/P20054 P20054]
 +
** [http://www.uniprot.org/uniprot/P05990 P05990]
 +
** [http://www.uniprot.org/uniprot/Q06950 Q06950]
 +
** [http://www.uniprot.org/uniprot/P72934 P72934]
 +
** [http://www.uniprot.org/uniprot/P74438 P74438]
 +
** [http://www.uniprot.org/uniprot/O04904 O04904]
 +
** [http://www.uniprot.org/uniprot/P72170 P72170]
 +
** [http://www.uniprot.org/uniprot/O76138 O76138]
 +
** [http://www.uniprot.org/uniprot/O27199 O27199]
 +
** [http://www.uniprot.org/uniprot/P48795 P48795]
 +
{{#set: direction=REVERSIBLE}}
 +
{{#set: common name=ORF}}
 +
{{#set: ec number=EC-3.5.2.3}}
 +
{{#set: gene associated=Tiso_gene_15379}}
 +
{{#set: in pathway=PWY-7790|PWY-7791|PWY-5686}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=creinhardtii|esiliculosus|athaliana}}
+
{{#set: reconstruction source=creinhardtii|synechocystis}}
 +
{{#set: reconstruction category=manual}}
 +
{{#set: reconstruction source=primary_network}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction source=in-silico_annotation}}
+
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}

Revision as of 17:27, 10 January 2018

Reaction DIHYDROOROT-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • ORF
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7790, UMP biosynthesis II: PWY-7790
    • 6 reactions found over 6 reactions in the full pathway
  • PWY-7791, UMP biosynthesis III: PWY-7791
    • 5 reactions found over 6 reactions in the full pathway
  • PWY-5686, UMP biosynthesis I: PWY-5686
    • 6 reactions found over 6 reactions in the full pathway

Reconstruction information

External links







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