Difference between revisions of "Tiso gene 12647"

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(Created page with "Category:Gene == Gene Tiso_gene_4615 == * left end position: ** 12189 * transcription direction: ** NEGATIVE * right end position: ** 14665 * centisome position: ** 83.087...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=4.2.99.18-RXN 4.2.99.18-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** formamidopyrimidine...")
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_4615 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=4.2.99.18-RXN 4.2.99.18-RXN] ==
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* left end position:
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* direction:
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** 12189
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** NEGATIVE
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** formamidopyrimidine-dna_glycosylase
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* right end position:
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** endonuclease_iii
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** 14665
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** dna-(apurinic_or_apyrimidinic_site)_lyase
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* centisome position:
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* ec number:
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** 83.08794   
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** [http://enzyme.expasy.org/EC/4.2.99.18 EC-4.2.99.18]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[ALPHAGALACTOSID-RXN]]
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* With identifiers:
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** in-silico_annotation
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** 1 [[DNA-containing-abasic-Sites]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[3-terminal-unsaturated-sugars]][c] '''+''' 1 [[5-Phospho-terminated-DNAs]][c]
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***automated-name-match
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* With common name(s):
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** [[pantograph]]-[[creinhardtii]]
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** 1 a DNA containing an apurinic/apyrimidinic site[c] '''=>''' 1 H+[c] '''+''' 1 a 3'-terminal unsaturated sugar[c] '''+''' 1 a 5'-phospho-[DNA][c]
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* [[RXN-11501]]
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** in-silico_annotation
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== Genes associated with this reaction  ==
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***automated-name-match
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Genes have been associated with this reaction based on different elements listed below.
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** [[pantograph]]-[[creinhardtii]]
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* [[Tiso_gene_6558]]
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* [[RXN-11502]]
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** IN-SILICO_ANNOTATION
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** in-silico_annotation
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***EC-NUMBER
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***automated-name-match
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* [[Tiso_gene_14609]]
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** [[pantograph]]-[[creinhardtii]]
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** IN-SILICO_ANNOTATION
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* [[RXN-12088]]
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***EC-NUMBER
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** in-silico_annotation
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* [[Tiso_gene_1280]]
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***automated-name-match
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** IN-SILICO_ANNOTATION
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* [[RXN-17754]]
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***EC-NUMBER
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** in-silico_annotation
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** [[pantograph]]-[[esiliculosus]]
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***automated-name-match
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* [[Tiso_gene_5102]]
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* [[RXN-17830]]
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** IN-SILICO_ANNOTATION
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** in-silico_annotation
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***AUTOMATED-NAME-MATCH
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***automated-name-match
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* [[Tiso_gene_17380]]
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== Pathways associated ==
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** IN-SILICO_ANNOTATION
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* [[PWY-6527]]
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***AUTOMATED-NAME-MATCH
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* [[PWY0-1301]]
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** EXPERIMENTAL_ANNOTATION
 +
***AUTOMATED-NAME-MATCH
 +
== Pathways ==
 +
== Reconstruction information  ==
 +
* [[orthology]]:
 +
** [[pantograph]]:
 +
*** [[esiliculosus]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=12189}}
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* UNIPROT:
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{{#set: transcription direction=NEGATIVE}}
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** [http://www.uniprot.org/uniprot/P0AB83 P0AB83]
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{{#set: right end position=14665}}
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** [http://www.uniprot.org/uniprot/P28352 P28352]
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{{#set: centisome position=83.08794    }}
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** [http://www.uniprot.org/uniprot/Q58829 Q58829]
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{{#set: reaction associated=ALPHAGALACTOSID-RXN|RXN-11501|RXN-11502|RXN-12088|RXN-17754|RXN-17830}}
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** [http://www.uniprot.org/uniprot/Q9PHS1 Q9PHS1]
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{{#set: pathway associated=PWY-6527|PWY0-1301}}
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** [http://www.uniprot.org/uniprot/Q9JVT0 Q9JVT0]
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** [http://www.uniprot.org/uniprot/Q9PNL1 Q9PNL1]
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** [http://www.uniprot.org/uniprot/P44319 P44319]
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** [http://www.uniprot.org/uniprot/Q9CGM5 Q9CGM5]
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** [http://www.uniprot.org/uniprot/P04418 P04418]
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** [http://www.uniprot.org/uniprot/P27695 P27695]
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** [http://www.uniprot.org/uniprot/P23196 P23196]
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** [http://www.uniprot.org/uniprot/P22936 P22936]
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** [http://www.uniprot.org/uniprot/P43138 P43138]
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** [http://www.uniprot.org/uniprot/P95945 P95945]
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** [http://www.uniprot.org/uniprot/P50525 P50525]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=formamidopyrimidine-dna_glycosylase}}
 +
{{#set: common name=endonuclease_iii}}
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{{#set: common name=dna-(apurinic_or_apyrimidinic_site)_lyase}}
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{{#set: ec number=EC-4.2.99.18}}
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{{#set: gene associated=Tiso_gene_6558|Tiso_gene_14609|Tiso_gene_1280|Tiso_gene_5102|Tiso_gene_17380}}
 +
{{#set: in pathway=}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}

Revision as of 17:31, 10 January 2018

Reaction 4.2.99.18-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • formamidopyrimidine-dna_glycosylase
    • endonuclease_iii
    • dna-(apurinic_or_apyrimidinic_site)_lyase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links







Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_12647&oldid=18246"