Difference between revisions of "ADPREDUCT-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.1.3.46-RXN 3.1.3.46-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.o...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACONITATEDEHYDR-RXN ACONITATEDEHYDR-RXN] == * direction: ** REVERSIBLE * Synonym(s): == Reaction F...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.1.3.46-RXN 3.1.3.46-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACONITATEDEHYDR-RXN ACONITATEDEHYDR-RXN] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
−
* ec number:
+
−
** [http://enzyme.expasy.org/EC/3.1.3.46 EC-3.1.3.46]
+
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[CPD-535]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[FRUCTOSE-6P]][c]
+
** 1 [[CIT]][c] '''<=>''' 1 [[CIS-ACONITATE]][c] '''+''' 1 [[WATER]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 &beta;-D-fructose 2,6-bisphosphate[c] '''+''' 1 H2O[c] '''=>''' 1 phosphate[c] '''+''' 1 &beta;-D-fructofuranose 6-phosphate[c]
+
** 1 citrate[c] '''<=>''' 1 cis-aconitate[c] '''+''' 1 H2O[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_15398]]
+
* [[Tiso_gene_13007]]
 
** EXPERIMENTAL_ANNOTATION
 
** EXPERIMENTAL_ANNOTATION
−
***AUTOMATED-NAME-MATCH
+
***EC-NUMBER
−
** [[pantograph]]-[[creinhardtii]]
+
** [[pantograph]]-[[synechocystis]]
−
* [[Tiso_gene_2100]]
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
** [[pantograph]]-[[athaliana]]
+
−
* [[Tiso_gene_893]]
+
−
** [[pantograph]]-[[athaliana]]
+
−
* [[Tiso_gene_892]]
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY66-423]], fructose 2,6-bisphosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-423 PWY66-423]
+
* [[FERMENTATION-PWY]], mixed acid fermentation: [http://metacyc.org/META/NEW-IMAGE?object=FERMENTATION-PWY FERMENTATION-PWY]
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
** '''9''' reactions found over '''16''' reactions in the full pathway
 +
* [[PWY-5750]], itaconate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5750 PWY-5750]
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-5913]], partial TCA cycle (obligate autotrophs): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5913 PWY-5913]
 +
** '''9''' reactions found over '''11''' reactions in the full pathway
 +
* [[REDCITCYC]], TCA cycle VIII (helicobacter): [http://metacyc.org/META/NEW-IMAGE?object=REDCITCYC REDCITCYC]
 +
** '''6''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-5392]], reductive TCA cycle II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5392 PWY-5392]
 +
** '''5''' reactions found over '''12''' reactions in the full pathway
 +
* [[P23-PWY]], reductive TCA cycle I: [http://metacyc.org/META/NEW-IMAGE?object=P23-PWY P23-PWY]
 +
** '''7''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-7124]], ethylene biosynthesis V (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7124 PWY-7124]
 +
** '''7''' reactions found over '''10''' reactions in the full pathway
 +
* [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase): [http://metacyc.org/META/NEW-IMAGE?object=P105-PWY P105-PWY]
 +
** '''9''' reactions found over '''11''' reactions in the full pathway
 +
* [[GLYOXYLATE-BYPASS]], glyoxylate cycle: [http://metacyc.org/META/NEW-IMAGE?object=GLYOXYLATE-BYPASS GLYOXYLATE-BYPASS]
 +
** '''6''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6969 PWY-6969]
 +
** '''9''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-6728]], methylaspartate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6728 PWY-6728]
 +
** '''11''' reactions found over '''18''' reactions in the full pathway
 +
* [[PWY-6549]], L-glutamine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6549 PWY-6549]
 +
** '''6''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7254]], TCA cycle VII (acetate-producers): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7254 PWY-7254]
 +
** '''5''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-5690]], TCA cycle II (plants and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5690 PWY-5690]
 +
** '''6''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY66-398]], TCA cycle III (animals): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-398 PWY66-398]
 +
** '''10''' reactions found over '''11''' reactions in the full pathway
 +
* [[TCA]], TCA cycle I (prokaryotic): [http://metacyc.org/META/NEW-IMAGE?object=TCA TCA]
 +
** '''7''' reactions found over '''10''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* [[orthology]]:
 
* [[orthology]]:
 
** [[pantograph]]:
 
** [[pantograph]]:
−
*** [[creinhardtii]]
+
*** [[synechocystis]]
−
*** [[athaliana]]
+
 
* [[annotation]]:
 
* [[annotation]]:
 
** [[pathwaytools]]:
 
** [[pathwaytools]]:
Line 42: Line 60:
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17289 17289]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10228 10228]
 +
* PIR:
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A35544 A35544]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A44153 A44153]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A44154 A44154]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A47184 A47184]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A81801 A81801]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B48642 B48642]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C64362 C64362]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C64617 C64617]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C81356 C81356]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=F64734 F64734]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=F70873 F70873]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G64875 G64875]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G69599 G69599]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G86708 G86708]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H81775 H81775]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S17526 S17526]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S18720 S18720]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S26403 S26403]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S49849 S49849]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S50387 S50387]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S57528 S57528]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S57805 S57805]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S76777 S76777]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04693 T04693]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04820 T04820]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07611 T07611]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T10101 T10101]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T52543 T52543]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00763 R00763]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01325 R01325]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P26285 P26285]
+
** [http://www.uniprot.org/uniprot/P16276 P16276]
−
** [http://www.uniprot.org/uniprot/P25114 P25114]
+
** [http://www.uniprot.org/uniprot/Q01059 Q01059]
−
** [http://www.uniprot.org/uniprot/Q7M3I3 Q7M3I3]
+
** [http://www.uniprot.org/uniprot/Q9TSA1 Q9TSA1]
−
** [http://www.uniprot.org/uniprot/P49872 P49872]
+
** [http://www.uniprot.org/uniprot/Q9JTI5 Q9JTI5]
−
** [http://www.uniprot.org/uniprot/Q28830 Q28830]
+
** [http://www.uniprot.org/uniprot/P37032 P37032]
−
** [http://www.uniprot.org/uniprot/Q91348 Q91348]
+
** [http://www.uniprot.org/uniprot/P81291 P81291]
−
** [http://www.uniprot.org/uniprot/Q9JJH5 Q9JJH5]
+
** [http://www.uniprot.org/uniprot/Q9PP88 Q9PP88]
−
** [http://www.uniprot.org/uniprot/Q16875 Q16875]
+
** [http://www.uniprot.org/uniprot/P36683 P36683]
−
** [http://www.uniprot.org/uniprot/P07953 P07953]
+
** [http://www.uniprot.org/uniprot/O53166 O53166]
−
** [http://www.uniprot.org/uniprot/P16118 P16118]
+
** [http://www.uniprot.org/uniprot/P25516 P25516]
−
** [http://www.uniprot.org/uniprot/P32604 P32604]
+
** [http://www.uniprot.org/uniprot/P09339 P09339]
−
** [http://www.uniprot.org/uniprot/P70265 P70265]
+
** [http://www.uniprot.org/uniprot/Q9CHQ5 Q9CHQ5]
−
** [http://www.uniprot.org/uniprot/P70266 P70266]
+
** [http://www.uniprot.org/uniprot/Q9JT05 Q9JT05]
−
** [http://www.uniprot.org/uniprot/O24559 O24559]
+
** [http://www.uniprot.org/uniprot/Q99798 Q99798]
−
** [http://www.uniprot.org/uniprot/O81398 O81398]
+
** [http://www.uniprot.org/uniprot/P28271 P28271]
−
** [http://www.uniprot.org/uniprot/O64983 O64983]
+
** [http://www.uniprot.org/uniprot/P21399 P21399]
−
** [http://www.uniprot.org/uniprot/Q9URZ7 Q9URZ7]
+
** [http://www.uniprot.org/uniprot/Q42669 Q42669]
−
{{#set: direction=LEFT-TO-RIGHT}}
+
** [http://www.uniprot.org/uniprot/P19414 P19414]
−
{{#set: ec number=EC-3.1.3.46}}
+
** [http://www.uniprot.org/uniprot/P20004 P20004]
−
{{#set: gene associated=Tiso_gene_15398|Tiso_gene_2100|Tiso_gene_893|Tiso_gene_892}}
+
** [http://www.uniprot.org/uniprot/P49609 P49609]
−
{{#set: in pathway=PWY66-423}}
+
** [http://www.uniprot.org/uniprot/P74582 P74582]
 +
** [http://www.uniprot.org/uniprot/Q42560 Q42560]
 +
** [http://www.uniprot.org/uniprot/Q9SZ36 Q9SZ36]
 +
** [http://www.uniprot.org/uniprot/O04916 O04916]
 +
{{#set: direction=REVERSIBLE}}
 +
{{#set: gene associated=Tiso_gene_13007}}
 +
{{#set: in pathway=FERMENTATION-PWY|PWY-5750|PWY-5913|REDCITCYC|PWY-5392|P23-PWY|PWY-7124|P105-PWY|GLYOXYLATE-BYPASS|PWY-6969|PWY-6728|PWY-6549|PWY-7254|PWY-5690|PWY66-398|TCA}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=creinhardtii|athaliana}}
+
{{#set: reconstruction source=synechocystis}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
 
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}

Revision as of 18:37, 10 January 2018

Reaction ACONITATEDEHYDR-RXN

  • direction:
    • REVERSIBLE
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 citrate[c] <=> 1 cis-aconitate[c] + 1 H2O[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • FERMENTATION-PWY, mixed acid fermentation: FERMENTATION-PWY
    • 9 reactions found over 16 reactions in the full pathway
  • PWY-5750, itaconate biosynthesis: PWY-5750
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-5913, partial TCA cycle (obligate autotrophs): PWY-5913
    • 9 reactions found over 11 reactions in the full pathway
  • REDCITCYC, TCA cycle VIII (helicobacter): REDCITCYC
    • 6 reactions found over 9 reactions in the full pathway
  • PWY-5392, reductive TCA cycle II: PWY-5392
    • 5 reactions found over 12 reactions in the full pathway
  • P23-PWY, reductive TCA cycle I: P23-PWY
    • 7 reactions found over 12 reactions in the full pathway
  • PWY-7124, ethylene biosynthesis V (engineered): PWY-7124
    • 7 reactions found over 10 reactions in the full pathway
  • P105-PWY, TCA cycle IV (2-oxoglutarate decarboxylase): P105-PWY
    • 9 reactions found over 11 reactions in the full pathway
  • GLYOXYLATE-BYPASS, glyoxylate cycle: GLYOXYLATE-BYPASS
    • 6 reactions found over 6 reactions in the full pathway
  • PWY-6969, TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): PWY-6969
    • 9 reactions found over 12 reactions in the full pathway
  • PWY-6728, methylaspartate cycle: PWY-6728
    • 11 reactions found over 18 reactions in the full pathway
  • PWY-6549, L-glutamine biosynthesis III: PWY-6549
    • 6 reactions found over 9 reactions in the full pathway
  • PWY-7254, TCA cycle VII (acetate-producers): PWY-7254
    • 5 reactions found over 9 reactions in the full pathway
  • PWY-5690, TCA cycle II (plants and fungi): PWY-5690
    • 6 reactions found over 9 reactions in the full pathway
  • PWY66-398, TCA cycle III (animals): PWY66-398
    • 10 reactions found over 11 reactions in the full pathway
  • TCA, TCA cycle I (prokaryotic): TCA
    • 7 reactions found over 10 reactions in the full pathway

Reconstruction information

External links





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