Difference between revisions of "HEMESYN2-PWY"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1G-915 RXN1G-915] == * direction: ** LEFT-TO-RIGHT * common name: ** trans-delta2-cis,cis-delta1...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=FADSYN-RXN FADSYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** fad_synthetase * ec numbe...")
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1G-915 RXN1G-915] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=FADSYN-RXN FADSYN-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** trans-delta2-cis,cis-delta11,29-C48:3-[acyl-carrier protein] reductase
+
** fad_synthetase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.3.1.M4 EC-1.3.1.M4]
+
** [http://enzyme.expasy.org/EC/2.7.7.2 EC-2.7.7.2]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[PROTON]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[trans-D2-cis-cis-D11-29-C48-3-ACPs]][c] '''=>''' 1 [[NAD]][c] '''+''' 1 [[cis-cis-D11-29-C48-2-ACPs]][c]
+
** 1 [[FMN]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[FAD]][c] '''+''' 1 [[PPI]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H+[c] '''+''' 1 NADH[c] '''+''' 1 a trans-delta2-cis,cis-delta11,29-C48:3-[acp][c] '''=>''' 1 NAD+[c] '''+''' 1 a cis,cis-delta11,29-C48:2-[acp][c]
+
** 1 FMN[c] '''+''' 1 H+[c] '''+''' 1 ATP[c] '''=>''' 1 FAD[c] '''+''' 1 diphosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_10778]]
+
* [[Tiso_gene_5393]]
 +
** IN-SILICO_ANNOTATION
 +
***AUTOMATED-NAME-MATCH
 
** [[pantograph]]-[[esiliculosus]]
 
** [[pantograph]]-[[esiliculosus]]
 +
** [[pantograph]]-[[creinhardtii]]
 +
* [[Tiso_gene_5392]]
 +
** [[pantograph]]-[[creinhardtii]]
 +
* [[Tiso_gene_7479]]
 +
** [[pantograph]]-[[synechocystis]]
 +
* [[Tiso_gene_1086]]
 +
** [[pantograph]]-[[synechocystis]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWYG-321]], mycolate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWYG-321 PWYG-321]
+
* [[PWY66-366]], flavin biosynthesis IV (mammalian): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-366 PWY66-366]
−
** '''86''' reactions found over '''182''' reactions in the full pathway
+
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-6167]], flavin biosynthesis II (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6167 PWY-6167]
 +
** '''4''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-6168]], flavin biosynthesis III (fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6168 PWY-6168]
 +
** '''6''' reactions found over '''9''' reactions in the full pathway
 +
* [[RIBOSYN2-PWY]], flavin biosynthesis I (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=RIBOSYN2-PWY RIBOSYN2-PWY]
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-creinhardtii]]
−
*** [[esiliculosus]]
+
*** Tool: [[pantograph]]
 +
** Source: [[orthology-synechocystis]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17237 17237]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00161 R00161]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/Q9JVY5 Q9JVY5]
 +
** [http://www.uniprot.org/uniprot/Q9PHS7 Q9PHS7]
 +
** [http://www.uniprot.org/uniprot/Q59263 Q59263]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=trans-delta2-cis,cis-delta11,29-C48:3-[acyl-carrier protein] reductase}}
+
{{#set: common name=fad_synthetase}}
−
{{#set: ec number=EC-1.3.1.M4}}
+
{{#set: ec number=EC-2.7.7.2}}
−
{{#set: gene associated=Tiso_gene_10778}}
+
{{#set: gene associated=Tiso_gene_5393|Tiso_gene_5392|Tiso_gene_7479|Tiso_gene_1086}}
−
{{#set: in pathway=PWYG-321}}
+
{{#set: in pathway=PWY66-366|PWY-6167|PWY-6168|RIBOSYN2-PWY}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction source=orthology-creinhardtii|annotation-in-silico_annotation|orthology-synechocystis|orthology-esiliculosus}}
−
{{#set: reconstruction source=esiliculosus}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 17:52, 18 March 2018

Reaction FADSYN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • fad_synthetase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 FMN[c] + 1 H+[c] + 1 ATP[c] => 1 FAD[c] + 1 diphosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY66-366, flavin biosynthesis IV (mammalian): PWY66-366
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-6167, flavin biosynthesis II (archaea): PWY-6167
    • 4 reactions found over 10 reactions in the full pathway
  • PWY-6168, flavin biosynthesis III (fungi): PWY-6168
    • 6 reactions found over 9 reactions in the full pathway
  • RIBOSYN2-PWY, flavin biosynthesis I (bacteria and plants): RIBOSYN2-PWY
    • 7 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=HEMESYN2-PWY&oldid=20258"