Difference between revisions of "CPD-482"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=THIOL-OXIDASE-RXN THIOL-OXIDASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** sulfhydryl_...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=HEMESYN2-PWY HEMESYN2-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-475...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=THIOL-OXIDASE-RXN THIOL-OXIDASE-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=HEMESYN2-PWY HEMESYN2-PWY] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-4751]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33630 TAX-33630]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* common name:
 
* common name:
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** sulfhydryl_oxidase
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** heme biosynthesis II (anaerobic)
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** sulfhydryl_oxidase_1
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* ec number:
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** [http://enzyme.expasy.org/EC/1.8.3.2 EC-1.8.3.2]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''3''' reactions found over '''4''' reactions in the full pathway
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** 1 [[OXYGEN-MOLECULE]][c] '''+''' 2 [[Sulfhydryls]][c] '''=>''' 1 [[HYDROGEN-PEROXIDE]][c] '''+''' 1 [[CPD-8529]][c]
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* [[HEMN-RXN]]
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* With common name(s):
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** 5 associated gene(s):
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** 1 oxygen[c] '''+''' 2 R'C(R)SH[c] '''=>''' 1 hydrogen peroxide[c] '''+''' 1 R'C(R)S-S(R)CR'[c]
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*** [[Tiso_gene_18066]]
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*** [[Tiso_gene_13365]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_5577]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[Tiso_gene_13364]]
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* [[Tiso_gene_13847]]
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*** [[Tiso_gene_4004]]
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** IN-SILICO_ANNOTATION
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** 4 reconstruction source(s) associated:
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***EC-NUMBER
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*** [[orthology-athaliana]]
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** [[pantograph]]-[[esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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* [[Tiso_gene_17069]]
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*** [[orthology-synechocystis]]
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** IN-SILICO_ANNOTATION
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*** [[orthology-esiliculosus]]
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***AUTOMATED-NAME-MATCH
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* [[PROTOHEMEFERROCHELAT-RXN]]
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* [[Tiso_gene_8416]]
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** 2 associated gene(s):
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** IN-SILICO_ANNOTATION
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*** [[Tiso_gene_3284]]
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***AUTOMATED-NAME-MATCH
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*** [[Tiso_gene_15900]]
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* [[Tiso_gene_12069]]
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** 6 reconstruction source(s) associated:
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** IN-SILICO_ANNOTATION
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*** [[annotation-experimental_annotation]]
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***EC-NUMBER
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*** [[orthology-esiliculosus]]
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** [[pantograph]]-[[esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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* [[Tiso_gene_4530]]
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*** [[orthology-athaliana]]
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** IN-SILICO_ANNOTATION
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*** [[orthology-synechocystis]]
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***AUTOMATED-NAME-MATCH
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*** [[orthology-creinhardtii]]
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* [[Tiso_gene_3314]]
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* [[UROGENDECARBOX-RXN]]
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** IN-SILICO_ANNOTATION
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** 4 associated gene(s):
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***EC-NUMBER
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*** [[Tiso_gene_18743]]
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** [[pantograph]]-[[esiliculosus]]
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*** [[Tiso_gene_19684]]
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* [[Tiso_gene_12454]]
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*** [[Tiso_gene_18744]]
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** IN-SILICO_ANNOTATION
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*** [[Tiso_gene_5173]]
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***AUTOMATED-NAME-MATCH
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** 6 reconstruction source(s) associated:
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* [[Tiso_gene_16192]]
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*** [[annotation-experimental_annotation]]
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** IN-SILICO_ANNOTATION
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*** [[orthology-esiliculosus]]
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***AUTOMATED-NAME-MATCH
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*** [[annotation-in-silico_annotation]]
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* [[Tiso_gene_20163]]
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*** [[orthology-synechocystis]]
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** IN-SILICO_ANNOTATION
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*** [[manual-primary_network]]
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***AUTOMATED-NAME-MATCH
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*** [[orthology-creinhardtii]]
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* [[Tiso_gene_20164]]
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== Reaction(s) not found ==
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** IN-SILICO_ANNOTATION
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN0-6259 RXN0-6259]
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_9472]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_13846]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_7321]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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== Pathways  ==
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[esiliculosus]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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* ECOCYC:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17360 17360]
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** [http://metacyc.org/ECOLI/NEW-IMAGE?object=HEMESYN2-PWY HEMESYN2-PWY]
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-4751}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00057 R00057]
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{{#set: taxonomic range=TAX-33630}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: taxonomic range=TAX-2}}
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{{#set: common name=sulfhydryl_oxidase}}
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{{#set: common name=heme biosynthesis II (anaerobic)}}
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{{#set: common name=sulfhydryl_oxidase_1}}
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{{#set: reaction found=3}}
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{{#set: ec number=EC-1.8.3.2}}
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{{#set: total reaction=4}}
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{{#set: gene associated=Tiso_gene_13847|Tiso_gene_17069|Tiso_gene_8416|Tiso_gene_12069|Tiso_gene_4530|Tiso_gene_3314|Tiso_gene_12454|Tiso_gene_16192|Tiso_gene_20163|Tiso_gene_20164|Tiso_gene_9472|Tiso_gene_13846|Tiso_gene_7321}}
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{{#set: completion rate=75.0}}
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{{#set: in pathway=}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=in-silico_annotation}}
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Revision as of 17:52, 18 March 2018

Pathway HEMESYN2-PWY

Reaction(s) found

3 reactions found over 4 reactions in the full pathway

Reaction(s) not found

External links




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