Difference between revisions of "CPD-12366"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-8607 CPD-8607] == * smiles: ** CC(C)CCCC([CH]4(C1(C)(C(CO)(C2(=C(CC1)C3(C)([CH](CC2)C(C)(C)...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=THREDEHYD-RXN THREDEHYD-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** threonine_mitochond...")
Line 1: Line 1:
−
[[Category:Metabolite]]
+
[[Category:Reaction]]
−
== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-8607 CPD-8607] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=THREDEHYD-RXN THREDEHYD-RXN] ==
−
* smiles:
+
* direction:
−
** CC(C)CCCC([CH]4(C1(C)(C(CO)(C2(=C(CC1)C3(C)([CH](CC2)C(C)(C)C(O)CC3)))CC4)))C
+
** LEFT-TO-RIGHT
−
* inchi key:
+
−
** InChIKey=SJPDNXKPBQHPMZ-PUXRVUTHSA-N
+
 
* common name:
 
* common name:
−
** 4,4-dimethyl-14α-hydroxymethyl-5α-cholesta-8-en-3β-ol
+
** threonine_mitochondrial
−
* molecular weight:
+
** ORF
−
** 444.74   
+
** serine_racemase
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/4.3.1.19 EC-4.3.1.19]
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction(s) known to consume the compound ==
+
== Reaction Formula ==
−
* [[RXN66-12]]
+
* With identifiers:
−
== Reaction(s) known to produce the compound ==
+
** 1 [[THR]][c] '''=>''' 1 [[2-OXOBUTANOATE]][c] '''+''' 1 [[AMMONIUM]][c]
−
* [[RXN66-11]]
+
* With common name(s):
−
== Reaction(s) of unknown directionality ==
+
** 1 L-threonine[c] '''=>''' 1 2-oxobutanoate[c] '''+''' 1 ammonium[c]
 +
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* [[Tiso_gene_17207]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_8525]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_12535]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
** [[pantograph]]-[[athaliana]]
 +
** [[pantograph]]-[[synechocystis]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
** [[pantograph]]-[[creinhardtii]]
 +
== Pathways  ==
 +
* [[PWY66-428]], L-threonine degradation V: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-428 PWY66-428]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* [[orthology]]:
 +
** [[pantograph]]:
 +
*** [[creinhardtii]]
 +
*** [[synechocystis]]
 +
*** [[esiliculosus]]
 +
*** [[athaliana]]
 +
* [[manual]]:
 +
** [[primary_network]]
 +
* [[annotation]]:
 +
** [[pathwaytools]]:
 +
*** [[experimental_annotation]]
 +
*** [[in-silico_annotation]]
 
== External links  ==
 
== External links  ==
−
* PUBCHEM:
+
* RHEA:
−
** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=15698821 15698821]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22108 22108]
−
* CHEBI:
+
* LIGAND-RXN:
−
** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=87057 87057]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00996 R00996]
−
* HMDB : HMDB12160
+
* UNIPROT:
−
{{#set: smiles=CC(C)CCCC([CH]4(C1(C)(C(CO)(C2(=C(CC1)C3(C)([CH](CC2)C(C)(C)C(O)CC3)))CC4)))C}}
+
** [http://www.uniprot.org/uniprot/P25306 P25306]
−
{{#set: inchi key=InChIKey=SJPDNXKPBQHPMZ-PUXRVUTHSA-N}}
+
** [http://www.uniprot.org/uniprot/Q04513 Q04513]
−
{{#set: common name=4,4-dimethyl-14α-hydroxymethyl-5α-cholesta-8-en-3β-ol}}
+
** [http://www.uniprot.org/uniprot/P37946 P37946]
−
{{#set: molecular weight=444.74    }}
+
** [http://www.uniprot.org/uniprot/Q9JZW1 Q9JZW1]
−
{{#set: consumed by=RXN66-12}}
+
** [http://www.uniprot.org/uniprot/Q02145 Q02145]
−
{{#set: produced by=RXN66-11}}
+
** [http://www.uniprot.org/uniprot/P66897 P66897]
 +
** [http://www.uniprot.org/uniprot/Q9WYJ1 Q9WYJ1]
 +
** [http://www.uniprot.org/uniprot/Q9PP95 Q9PP95]
 +
** [http://www.uniprot.org/uniprot/P25379 P25379]
 +
** [http://www.uniprot.org/uniprot/P00927 P00927]
 +
** [http://www.uniprot.org/uniprot/P20506 P20506]
 +
** [http://www.uniprot.org/uniprot/P0AGF6 P0AGF6]
 +
** [http://www.uniprot.org/uniprot/P04968 P04968]
 +
** [http://www.uniprot.org/uniprot/P20132 P20132]
 +
** [http://www.uniprot.org/uniprot/P09367 P09367]
 +
** [http://www.uniprot.org/uniprot/Q9RWU8 Q9RWU8]
 +
** [http://www.uniprot.org/uniprot/Q9JUX5 Q9JUX5]
 +
** [http://www.uniprot.org/uniprot/Q9ZD93 Q9ZD93]
 +
** [http://www.uniprot.org/uniprot/P31212 P31212]
 +
** [http://www.uniprot.org/uniprot/P36007 P36007]
 +
** [http://www.uniprot.org/uniprot/P73375 P73375]
 +
** [http://www.uniprot.org/uniprot/Q9T0D1 Q9T0D1]
 +
** [http://www.uniprot.org/uniprot/Q39469 Q39469]
 +
** [http://www.uniprot.org/uniprot/Q93968 Q93968]
 +
** [http://www.uniprot.org/uniprot/Q9XAA4 Q9XAA4]
 +
** [http://www.uniprot.org/uniprot/O94634 O94634]
 +
** [http://www.uniprot.org/uniprot/O59791 O59791]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=threonine_mitochondrial}}
 +
{{#set: common name=ORF}}
 +
{{#set: common name=serine_racemase}}
 +
{{#set: ec number=EC-4.3.1.19}}
 +
{{#set: gene associated=Tiso_gene_17207|Tiso_gene_8525|Tiso_gene_12535}}
 +
{{#set: in pathway=PWY66-428}}
 +
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction tool=pantograph}}
 +
{{#set: reconstruction source=creinhardtii|synechocystis|esiliculosus|athaliana}}
 +
{{#set: reconstruction category=manual}}
 +
{{#set: reconstruction source=primary_network}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}
 +
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}

Revision as of 15:48, 10 January 2018

Reaction THREDEHYD-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • threonine_mitochondrial
    • ORF
    • serine_racemase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 L-threonine[c] => 1 2-oxobutanoate[c] + 1 ammonium[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY66-428, L-threonine degradation V: PWY66-428
    • 1 reactions found over 2 reactions in the full pathway

Reconstruction information

External links








Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=CPD-12366&oldid=10463"