Difference between revisions of "RXN-602"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.3.7.4-RXN 1.3.7.4-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org...")
(Created page with "Category:Gene == Gene Tiso_gene_8860 == * left end position: ** 7937 * transcription direction: ** POSITIVE * right end position: ** 9448 * centisome position: ** 80.83308...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.3.7.4-RXN 1.3.7.4-RXN] ==
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== Gene Tiso_gene_8860 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 7937
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* ec number:
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* transcription direction:
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** [http://enzyme.expasy.org/EC/1.3.7.4 EC-1.3.7.4]
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** POSITIVE
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* right end position:
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** 9448
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* centisome position:
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** 80.83308   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* [[ATPASE-RXN]]
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** 1 [[BILIVERDINE]][c] '''+''' 2 [[Reduced-ferredoxins]][c] '''+''' 2 [[PROTON]][c] '''=>''' 1 [[3Z-PHYTOCHROMOBILIN]][c] '''+''' 2 [[Oxidized-ferredoxins]][c]
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** in-silico_annotation
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* With common name(s):
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***ec-number
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** 1 biliverdin-IX-α[c] '''+''' 2 a reduced ferredoxin [iron-sulfur] cluster[c] '''+''' 2 H+[c] '''=>''' 1 (3Z)-phytochromobilin[c] '''+''' 2 an oxidized ferredoxin [iron-sulfur] cluster[c]
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* [[NUCLEOSIDE-TRIPHOSPHATASE-RXN]]
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** in-silico_annotation
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== Genes associated with this reaction  ==
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***ec-number
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Genes have been associated with this reaction based on different elements listed below.
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* [[RXN-12195]]
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* [[Tiso_gene_17350]]
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** in-silico_annotation
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** [[pantograph]]-[[athaliana]]
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***ec-number
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** [[pantograph]]-[[esiliculosus]]
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* [[RXN-12196]]
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== Pathways  ==
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** in-silico_annotation
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* [[PWY-7170]], phytochromobilin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7170 PWY-7170]
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***ec-number
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** '''1''' reactions found over '''3''' reactions in the full pathway
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* [[RXN0-5462]]
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== Reconstruction information  ==
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** in-silico_annotation
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* [[orthology]]:
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***ec-number
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** [[pantograph]]:
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== Pathways associated ==
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*** [[esiliculosus]]
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* [[PWY-7184]]
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*** [[athaliana]]
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* [[PWY-7198]]
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* [[PWY-6545]]
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* [[PWY-7210]]
 
== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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{{#set: left end position=7937}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03678 R03678]
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{{#set: transcription direction=POSITIVE}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: right end position=9448}}
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{{#set: ec number=EC-1.3.7.4}}
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{{#set: centisome position=80.83308    }}
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{{#set: gene associated=Tiso_gene_17350}}
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{{#set: reaction associated=ATPASE-RXN|NUCLEOSIDE-TRIPHOSPHATASE-RXN|RXN-12195|RXN-12196|RXN0-5462}}
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{{#set: in pathway=PWY-7170}}
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{{#set: pathway associated=PWY-7184|PWY-7198|PWY-6545|PWY-7210}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus|athaliana}}
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Revision as of 17:54, 18 March 2018

Gene Tiso_gene_8860

  • left end position:
    • 7937
  • transcription direction:
    • POSITIVE
  • right end position:
    • 9448
  • centisome position:
    • 80.83308
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-602&oldid=20566"