Difference between revisions of "PWY-5153"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=HISTIDINE--TRNA-LIGASE-RXN HISTIDINE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common na...")
 
(Created page with "Category:Gene == Gene Tiso_gene_12629 == * left end position: ** 685 * transcription direction: ** POSITIVE * right end position: ** 3463 * centisome position: ** 10.04546...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=HISTIDINE--TRNA-LIGASE-RXN HISTIDINE--TRNA-LIGASE-RXN] ==
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== Gene Tiso_gene_12629 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 685
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* common name:
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* transcription direction:
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** histidyl-trna_synthetase_(c-terminal_region)_histidyl-trna_synthetase_(n-terminal_region)
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** POSITIVE
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** ORF
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* right end position:
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** atp-dependent_rna_helicase_dhx30-like
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** 3463
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* ec number:
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* centisome position:
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** [http://enzyme.expasy.org/EC/6.1.1.21 EC-6.1.1.21]
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** 10.045462   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* [[5.99.1.3-RXN]]
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** 1 [[HIS]][c] '''+''' 1 [[HIS-tRNAs]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[Charged-HIS-tRNAs]][c] '''+''' 1 [[AMP]][c]
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** in-silico_annotation
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* With common name(s):
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***ec-number
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** 1 L-histidine[c] '''+''' 1 a tRNAhis[c] '''+''' 1 ATP[c] '''=>''' 1 diphosphate[c] '''+''' 1 an L-histidyl-[tRNAhis][c] '''+''' 1 AMP[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_13414]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_8798]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_12634]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
 
** [[pantograph]]-[[esiliculosus]]
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== Pathways ==
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== Pathways associated ==
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* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
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** '''21''' reactions found over '''21''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[esiliculosus]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: left end position=685}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17313 17313]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: right end position=3463}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03655 R03655]
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{{#set: centisome position=10.045462    }}
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* UNIPROT:
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{{#set: reaction associated=5.99.1.3-RXN}}
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** [http://www.uniprot.org/uniprot/Q9X0H5 Q9X0H5]
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** [http://www.uniprot.org/uniprot/O58028 O58028]
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** [http://www.uniprot.org/uniprot/O67223 O67223]
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** [http://www.uniprot.org/uniprot/Q9ZK27 Q9ZK27]
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** [http://www.uniprot.org/uniprot/Q9PPF4 Q9PPF4]
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** [http://www.uniprot.org/uniprot/P56455 P56455]
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** [http://www.uniprot.org/uniprot/Q58406 Q58406]
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** [http://www.uniprot.org/uniprot/O32039 O32039]
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** [http://www.uniprot.org/uniprot/O51160 O51160]
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** [http://www.uniprot.org/uniprot/O66522 O66522]
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** [http://www.uniprot.org/uniprot/Q9ZDL9 Q9ZDL9]
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** [http://www.uniprot.org/uniprot/Q9JUZ9 Q9JUZ9]
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** [http://www.uniprot.org/uniprot/Q9CE78 Q9CE78]
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** [http://www.uniprot.org/uniprot/P47281 P47281]
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** [http://www.uniprot.org/uniprot/O34459 O34459]
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** [http://www.uniprot.org/uniprot/O83647 O83647]
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** [http://www.uniprot.org/uniprot/O84547 O84547]
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** [http://www.uniprot.org/uniprot/Q9Z7P1 Q9Z7P1]
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** [http://www.uniprot.org/uniprot/P43823 P43823]
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** [http://www.uniprot.org/uniprot/Q61035 Q61035]
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** [http://www.uniprot.org/uniprot/P30053 P30053]
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** [http://www.uniprot.org/uniprot/P46696 P46696]
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** [http://www.uniprot.org/uniprot/P51348 P51348]
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** [http://www.uniprot.org/uniprot/P75069 P75069]
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** [http://www.uniprot.org/uniprot/Q55653 Q55653]
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** [http://www.uniprot.org/uniprot/Q49027 Q49027]
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** [http://www.uniprot.org/uniprot/P07263 P07263]
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** [http://www.uniprot.org/uniprot/P60906 P60906]
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** [http://www.uniprot.org/uniprot/P12081 P12081]
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** [http://www.uniprot.org/uniprot/P93422 P93422]
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** [http://www.uniprot.org/uniprot/O82413 O82413]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=histidyl-trna_synthetase_(c-terminal_region)_histidyl-trna_synthetase_(n-terminal_region)}}
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{{#set: common name=ORF}}
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{{#set: common name=atp-dependent_rna_helicase_dhx30-like}}
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{{#set: ec number=EC-6.1.1.21}}
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{{#set: gene associated=Tiso_gene_13414|Tiso_gene_8798|Tiso_gene_12634}}
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{{#set: in pathway=TRNA-CHARGING-PWY}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Revision as of 15:42, 10 January 2018

Gene Tiso_gene_12629

  • left end position:
    • 685
  • transcription direction:
    • POSITIVE
  • right end position:
    • 3463
  • centisome position:
    • 10.045462
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-5153&oldid=10086"