Difference between revisions of "L-3-HYDROXYACYL-COA"
From metabolic_network
(Created page with "Category:Gene == Gene Tiso_gene_11070 == * left end position: ** 6524 * transcription direction: ** POSITIVE * right end position: ** 8073 * centisome position: ** 80.8125...") |
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=4-COUMARATE--COA-LIGASE-RXN 4-COUMARATE--COA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * ec numb...") |
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− | [[Category: | + | [[Category:Reaction]] |
− | == | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=4-COUMARATE--COA-LIGASE-RXN 4-COUMARATE--COA-LIGASE-RXN] == |
− | * | + | * direction: |
− | + | ** LEFT-TO-RIGHT | |
− | + | * ec number: | |
− | ** | + | ** [http://enzyme.expasy.org/EC/6.2.1.12 EC-6.2.1.12] |
− | * | + | |
− | ** | + | |
− | + | ||
− | + | ||
* Synonym(s): | * Synonym(s): | ||
− | == | + | == Reaction Formula == |
− | * [[ | + | * With identifiers: |
− | ** in- | + | ** 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[COUMARATE]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[P-COUMAROYL-COA]][c] |
− | *** | + | * With common name(s): |
− | == | + | ** 1 ATP[c] '''+''' 1 coenzyme A[c] '''+''' 1 4-coumarate[c] '''=>''' 1 diphosphate[c] '''+''' 1 AMP[c] '''+''' 1 4-coumaroyl-CoA[c] |
+ | |||
+ | == Genes associated with this reaction == | ||
+ | Genes have been associated with this reaction based on different elements listed below. | ||
+ | * [[Tiso_gene_12275]] | ||
+ | ** [[pantograph]]-[[athaliana]] | ||
+ | ** [[pantograph]]-[[esiliculosus]] | ||
+ | * [[Tiso_gene_14183]] | ||
+ | ** [[pantograph]]-[[esiliculosus]] | ||
+ | == Pathways == | ||
+ | * [[PWY-6920]], 6-gingerol analog biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6920 PWY-6920] | ||
+ | ** '''5''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[PWY-6435]], 4-hydroxybenzoate biosynthesis V: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6435 PWY-6435] | ||
+ | ** '''4''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY1F-FLAVSYN]], flavonoid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY1F-FLAVSYN PWY1F-FLAVSYN] | ||
+ | ** '''4''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY-7046]], 4-coumarate degradation (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7046 PWY-7046] | ||
+ | ** '''2''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[PWY-361]], phenylpropanoid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-361 PWY-361] | ||
+ | ** '''7''' reactions found over '''15''' reactions in the full pathway | ||
+ | * [[PWY-7397]], naringenin biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7397 PWY-7397] | ||
+ | ** '''2''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY-6320]], phaselate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6320 PWY-6320] | ||
+ | ** '''1''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY-7398]], coumarins biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7398 PWY-7398] | ||
+ | ** '''3''' reactions found over '''13''' reactions in the full pathway | ||
+ | * [[PWY-5754]], 4-hydroxybenzoate biosynthesis I (eukaryotes): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5754 PWY-5754] | ||
+ | ** '''2''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[PWY-5135]], xanthohumol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5135 PWY-5135] | ||
+ | ** '''1''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY-6982]], umbelliferone biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6982 PWY-6982] | ||
+ | ** '''1''' reactions found over '''3''' reactions in the full pathway | ||
+ | == Reconstruction information == | ||
+ | * [[orthology]]: | ||
+ | ** [[pantograph]]: | ||
+ | *** [[esiliculosus]] | ||
+ | *** [[athaliana]] | ||
== External links == | == External links == | ||
− | {{#set: | + | * RHEA: |
− | {{#set: | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19641 19641] |
− | {{#set: | + | * LIGAND-RXN: |
− | {{#set: | + | ** [http://www.genome.jp/dbget-bin/www_bget?R01616 R01616] |
− | {{#set: | + | * UNIPROT: |
+ | ** [http://www.uniprot.org/uniprot/P31684 P31684] | ||
+ | ** [http://www.uniprot.org/uniprot/P31685 P31685] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9SWH8 Q9SWH8] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9SWH7 Q9SWH7] | ||
+ | ** [http://www.uniprot.org/uniprot/P17814 P17814] | ||
+ | ** [http://www.uniprot.org/uniprot/P31687 P31687] | ||
+ | ** [http://www.uniprot.org/uniprot/Q8S5C2 Q8S5C2] | ||
+ | ** [http://www.uniprot.org/uniprot/P14912 P14912] | ||
+ | ** [http://www.uniprot.org/uniprot/P14913 P14913] | ||
+ | ** [http://www.uniprot.org/uniprot/P31686 P31686] | ||
+ | ** [http://www.uniprot.org/uniprot/Q42524 Q42524] | ||
+ | ** [http://www.uniprot.org/uniprot/Q42943 Q42943] | ||
+ | ** [http://www.uniprot.org/uniprot/Q42982 Q42982] | ||
+ | ** [http://www.uniprot.org/uniprot/P93360 P93360] | ||
+ | ** [http://www.uniprot.org/uniprot/P93361 P93361] | ||
+ | ** [http://www.uniprot.org/uniprot/O24146 O24146] | ||
+ | ** [http://www.uniprot.org/uniprot/O48868 O48868] | ||
+ | ** [http://www.uniprot.org/uniprot/O48869 O48869] | ||
+ | ** [http://www.uniprot.org/uniprot/O81139 O81139] | ||
+ | ** [http://www.uniprot.org/uniprot/O81140 O81140] | ||
+ | ** [http://www.uniprot.org/uniprot/P41636 P41636] | ||
+ | {{#set: direction=LEFT-TO-RIGHT}} | ||
+ | {{#set: ec number=EC-6.2.1.12}} | ||
+ | {{#set: gene associated=Tiso_gene_12275|Tiso_gene_14183}} | ||
+ | {{#set: in pathway=PWY-6920|PWY-6435|PWY1F-FLAVSYN|PWY-7046|PWY-361|PWY-7397|PWY-6320|PWY-7398|PWY-5754|PWY-5135|PWY-6982}} | ||
+ | {{#set: reconstruction category=orthology}} | ||
+ | {{#set: reconstruction tool=pantograph}} | ||
+ | {{#set: reconstruction source=esiliculosus|athaliana}} |
Revision as of 15:50, 10 January 2018
Contents
Reaction 4-COUMARATE--COA-LIGASE-RXN
- direction:
- LEFT-TO-RIGHT
- ec number:
- Synonym(s):
Reaction Formula
- With identifiers:
- With common name(s):
- 1 ATP[c] + 1 coenzyme A[c] + 1 4-coumarate[c] => 1 diphosphate[c] + 1 AMP[c] + 1 4-coumaroyl-CoA[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
Pathways
- PWY-6920, 6-gingerol analog biosynthesis (engineered): PWY-6920
- 5 reactions found over 6 reactions in the full pathway
- PWY-6435, 4-hydroxybenzoate biosynthesis V: PWY-6435
- 4 reactions found over 5 reactions in the full pathway
- PWY1F-FLAVSYN, flavonoid biosynthesis: PWY1F-FLAVSYN
- 4 reactions found over 5 reactions in the full pathway
- PWY-7046, 4-coumarate degradation (anaerobic): PWY-7046
- 2 reactions found over 6 reactions in the full pathway
- PWY-361, phenylpropanoid biosynthesis: PWY-361
- 7 reactions found over 15 reactions in the full pathway
- PWY-7397, naringenin biosynthesis (engineered): PWY-7397
- 2 reactions found over 4 reactions in the full pathway
- PWY-6320, phaselate biosynthesis: PWY-6320
- 1 reactions found over 5 reactions in the full pathway
- PWY-7398, coumarins biosynthesis (engineered): PWY-7398
- 3 reactions found over 13 reactions in the full pathway
- PWY-5754, 4-hydroxybenzoate biosynthesis I (eukaryotes): PWY-5754
- 2 reactions found over 6 reactions in the full pathway
- PWY-5135, xanthohumol biosynthesis: PWY-5135
- 1 reactions found over 4 reactions in the full pathway
- PWY-6982, umbelliferone biosynthesis: PWY-6982
- 1 reactions found over 3 reactions in the full pathway
Reconstruction information
External links
- RHEA:
- LIGAND-RXN:
- UNIPROT: