Difference between revisions of "Tiso gene 568"

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(Created page with "Category:Gene == Gene Tiso_gene_568 == * left end position: ** 13644 * transcription direction: ** POSITIVE * right end position: ** 14113 * centisome position: ** 43.3583...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACYLCOASYN-RXN ACYLCOASYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** 2,3,4-saturated f...")
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_568 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACYLCOASYN-RXN ACYLCOASYN-RXN] ==
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* left end position:
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* direction:
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** 13644
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** POSITIVE
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** 2,3,4-saturated fatty acyl-CoA synthetase
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* right end position:
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** polyketide_synthase
−
** 14113
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** long_chain_acyl-_synthetase
−
* centisome position:
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** acyl-_synthetase
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** 43.358334   
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** ORF
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/6.2.1.3 EC-6.2.1.3]
 
* Synonym(s):
 
* Synonym(s):
 +
** Acyl-activating enzyme
 +
** Fatty acid thiokinase (long-chain)
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[ATPASE-RXN]]
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* With identifiers:
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** in-silico_annotation
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** 1 [[CO-A]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[CPD66-39]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Saturated-Fatty-Acyl-CoA]][c] '''+''' 1 [[PPI]][c]
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***ec-number
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* With common name(s):
−
== Pathways associated ==
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** 1 coenzyme A[c] '''+''' 1 ATP[c] '''+''' 1 a 2,3,4-saturated fatty acid[c] '''=>''' 1 AMP[c] '''+''' 1 a 2,3,4-saturated fatty acyl CoA[c] '''+''' 1 diphosphate[c]
 +
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* [[Tiso_gene_500]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_10876]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
 +
* [[Tiso_gene_9394]]
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** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_4191]]
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** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_136]]
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** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_7855]]
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** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_135]]
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** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_348]]
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** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_13394]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
== Pathways ==
 +
* [[PWY-5136]], fatty acid β-oxidation II (peroxisome): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5136 PWY-5136]
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7288]], fatty acid β-oxidation (peroxisome, yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7288 PWY-7288]
 +
** '''3''' reactions found over '''5''' reactions in the full pathway
 +
* [[FAO-PWY]], fatty acid β-oxidation I: [http://metacyc.org/META/NEW-IMAGE?object=FAO-PWY FAO-PWY]
 +
** '''5''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY66-391]], fatty acid β-oxidation VI (peroxisome): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-391 PWY66-391]
 +
** '''5''' reactions found over '''7''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* [[orthology]]:
 +
** [[pantograph]]:
 +
*** [[esiliculosus]]
 +
* [[annotation]]:
 +
** [[pathwaytools]]:
 +
*** [[experimental_annotation]]
 +
*** [[in-silico_annotation]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=13644}}
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* UNIPROT:
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{{#set: transcription direction=POSITIVE}}
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** [http://www.uniprot.org/uniprot/P18163 P18163]
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{{#set: right end position=14113}}
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** [http://www.uniprot.org/uniprot/P39518 P39518]
−
{{#set: centisome position=43.358334    }}
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** [http://www.uniprot.org/uniprot/O51162 O51162]
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{{#set: reaction associated=ATPASE-RXN}}
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** [http://www.uniprot.org/uniprot/P39002 P39002]
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** [http://www.uniprot.org/uniprot/Q9RYK3 Q9RYK3]
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** [http://www.uniprot.org/uniprot/Q10776 Q10776]
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** [http://www.uniprot.org/uniprot/O83181 O83181]
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** [http://www.uniprot.org/uniprot/Q9RTR4 Q9RTR4]
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** [http://www.uniprot.org/uniprot/P94547 P94547]
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** [http://www.uniprot.org/uniprot/Q9YCF0 Q9YCF0]
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** [http://www.uniprot.org/uniprot/Q9CHR0 Q9CHR0]
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** [http://www.uniprot.org/uniprot/Q9JTK0 Q9JTK0]
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** [http://www.uniprot.org/uniprot/P44446 P44446]
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** [http://www.uniprot.org/uniprot/O30039 O30039]
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** [http://www.uniprot.org/uniprot/O51539 O51539]
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** [http://www.uniprot.org/uniprot/Q9JYJ7 Q9JYJ7]
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** [http://www.uniprot.org/uniprot/P33121 P33121]
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** [http://www.uniprot.org/uniprot/P33124 P33124]
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** [http://www.uniprot.org/uniprot/P30624 P30624]
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** [http://www.uniprot.org/uniprot/Q02602 Q02602]
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** [http://www.uniprot.org/uniprot/P69451 P69451]
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** [http://www.uniprot.org/uniprot/P69452 P69452]
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** [http://www.uniprot.org/uniprot/Q8JZR0 Q8JZR0]
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** [http://www.uniprot.org/uniprot/P47912 P47912]
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** [http://www.uniprot.org/uniprot/P73004 P73004]
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** [http://www.uniprot.org/uniprot/O81614 O81614]
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** [http://www.uniprot.org/uniprot/O15840 O15840]
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** [http://www.uniprot.org/uniprot/Q96537 Q96537]
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** [http://www.uniprot.org/uniprot/Q96538 Q96538]
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** [http://www.uniprot.org/uniprot/Q96338 Q96338]
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** [http://www.uniprot.org/uniprot/Q9T009 Q9T009]
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** [http://www.uniprot.org/uniprot/Q9T0A0 Q9T0A0]
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** [http://www.uniprot.org/uniprot/Q9ZBW6 Q9ZBW6]
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** [http://www.uniprot.org/uniprot/Q9X7Y5 Q9X7Y5]
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** [http://www.uniprot.org/uniprot/Q9X7Z0 Q9X7Z0]
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** [http://www.uniprot.org/uniprot/O60135 O60135]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=2,3,4-saturated fatty acyl-CoA synthetase}}
 +
{{#set: common name=polyketide_synthase}}
 +
{{#set: common name=long_chain_acyl-_synthetase}}
 +
{{#set: common name=acyl-_synthetase}}
 +
{{#set: common name=ORF}}
 +
{{#set: ec number=EC-6.2.1.3}}
 +
{{#set: common name=Acyl-activating enzyme|Fatty acid thiokinase (long-chain)}}
 +
{{#set: gene associated=Tiso_gene_500|Tiso_gene_10876|Tiso_gene_9394|Tiso_gene_4191|Tiso_gene_136|Tiso_gene_7855|Tiso_gene_135|Tiso_gene_348|Tiso_gene_13394}}
 +
{{#set: in pathway=PWY-5136|PWY-7288|FAO-PWY|PWY66-391}}
 +
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction tool=pantograph}}
 +
{{#set: reconstruction source=esiliculosus}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}
 +
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}

Revision as of 16:53, 10 January 2018

Reaction ACYLCOASYN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 2,3,4-saturated fatty acyl-CoA synthetase
    • polyketide_synthase
    • long_chain_acyl-_synthetase
    • acyl-_synthetase
    • ORF
  • ec number:
  • Synonym(s):
    • Acyl-activating enzyme
    • Fatty acid thiokinase (long-chain)

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 coenzyme A[c] + 1 ATP[c] + 1 a 2,3,4-saturated fatty acid[c] => 1 AMP[c] + 1 a 2,3,4-saturated fatty acyl CoA[c] + 1 diphosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5136, fatty acid β-oxidation II (peroxisome): PWY-5136
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-7288, fatty acid β-oxidation (peroxisome, yeast): PWY-7288
    • 3 reactions found over 5 reactions in the full pathway
  • FAO-PWY, fatty acid β-oxidation I: FAO-PWY
    • 5 reactions found over 7 reactions in the full pathway
  • PWY66-391, fatty acid β-oxidation VI (peroxisome): PWY66-391
    • 5 reactions found over 7 reactions in the full pathway

Reconstruction information

External links









Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_568&oldid=10761"