Difference between revisions of "CPD-7419"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14271 RXN-14271] == * direction: ** LEFT-TO-RIGHT * common name: ** (S)-3-hydroxypalmitoyl-CoA...")
 
(Created page with "Category:Gene == Gene Tiso_gene_18790 == * left end position: ** 57 * transcription direction: ** POSITIVE * right end position: ** 2572 * centisome position: ** 2.040086...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14271 RXN-14271] ==
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== Gene Tiso_gene_18790 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 57
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* common name:
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* transcription direction:
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** (S)-3-hydroxypalmitoyl-CoA oxidoreductase
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** POSITIVE
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* ec number:
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* right end position:
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** [http://enzyme.expasy.org/EC/1.1.1.211 EC-1.1.1.211]
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** 2572
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* centisome position:
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** 2.040086   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* [[DNA-DIRECTED-DNA-POLYMERASE-RXN]]
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** 1 [[NAD]][c] '''+''' 1 [[CPD0-2232]][c] '''=>''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[3-OXOPALMITOYL-COA]][c]
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** in-silico_annotation
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* With common name(s):
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***ec-number
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** 1 NAD+[c] '''+''' 1 (S)-3-hydroxyhexadecanoyl-CoA[c] '''=>''' 1 NADH[c] '''+''' 1 H+[c] '''+''' 1 3-oxo-palmitoyl-CoA[c]
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== Pathways associated ==
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_14262]]
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** EXPERIMENTAL_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_5857]]
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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** [[pantograph]]-[[creinhardtii]]
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== Pathways ==
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* [[PWY-7654]], (8E,10E)-dodeca-8,10-dienol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7654 PWY-7654]
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** '''6''' reactions found over '''11''' reactions in the full pathway
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* [[PWY-7656]], Spodoptera littoralis pheromone biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7656 PWY-7656]
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** '''6''' reactions found over '''22''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[creinhardtii]]
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*** [[esiliculosus]]
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*** [[athaliana]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: left end position=57}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=31160 31160]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: right end position=2572}}
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** [http://www.genome.jp/dbget-bin/www_bget?R04737 R04737]
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{{#set: centisome position=2.040086    }}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction associated=DNA-DIRECTED-DNA-POLYMERASE-RXN}}
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{{#set: common name=(S)-3-hydroxypalmitoyl-CoA oxidoreductase}}
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{{#set: ec number=EC-1.1.1.211}}
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{{#set: gene associated=Tiso_gene_14262|Tiso_gene_5857}}
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{{#set: in pathway=PWY-7654|PWY-7656}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=creinhardtii|esiliculosus|athaliana}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Revision as of 17:08, 10 January 2018

Gene Tiso_gene_18790

  • left end position:
    • 57
  • transcription direction:
    • POSITIVE
  • right end position:
    • 2572
  • centisome position:
    • 2.040086
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=CPD-7419&oldid=11656"