Difference between revisions of "TREHALOSESYN-PWY"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ORNITHINE-CYCLODEAMINASE-RXN ORNITHINE-CYCLODEAMINASE-RXN] == * direction: ** LEFT-TO-RIGHT * commo...")
 
(Created page with "Category:Gene == Gene Tiso_gene_4505 == * left end position: ** 3880 * transcription direction: ** POSITIVE * right end position: ** 6253 * centisome position: ** 26.26235...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ORNITHINE-CYCLODEAMINASE-RXN ORNITHINE-CYCLODEAMINASE-RXN] ==
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== Gene Tiso_gene_4505 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 3880
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* common name:
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* transcription direction:
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** ornithine_cyclodeaminase
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** POSITIVE
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* ec number:
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* right end position:
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** [http://enzyme.expasy.org/EC/4.3.1.12 EC-4.3.1.12]
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** 6253
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* centisome position:
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** 26.262352   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* [[RXN0-1281]]
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** 1 [[L-ORNITHINE]][c] '''=>''' 1 [[PRO]][c] '''+''' 1 [[AMMONIUM]][c]
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** in-silico_annotation
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* With common name(s):
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***automated-name-match
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** 1 L-ornithine[c] '''=>''' 1 L-proline[c] '''+''' 1 ammonium[c]
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== Pathways associated ==
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_17134]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_1843]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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** [[pantograph]]-[[esiliculosus]]
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== Pathways ==
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* [[ORN-AMINOPENTANOATE-CAT-PWY]], L-ornithine degradation I (L-proline biosynthesis): [http://metacyc.org/META/NEW-IMAGE?object=ORN-AMINOPENTANOATE-CAT-PWY ORN-AMINOPENTANOATE-CAT-PWY]
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** '''1''' reactions found over '''1''' reactions in the full pathway
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* [[ARG-GLU-PWY]], L-arginine degradation VII (arginase 3 pathway): [http://metacyc.org/META/NEW-IMAGE?object=ARG-GLU-PWY ARG-GLU-PWY]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[esiliculosus]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: left end position=3880}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24368 24368]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: right end position=6253}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00671 R00671]
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{{#set: centisome position=26.262352    }}
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* UNIPROT:
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{{#set: reaction associated=RXN0-1281}}
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** [http://www.uniprot.org/uniprot/Q59701 Q59701]
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** [http://www.uniprot.org/uniprot/P09773 P09773]
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** [http://www.uniprot.org/uniprot/P33728 P33728]
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** [http://www.uniprot.org/uniprot/O68052 O68052]
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** [http://www.uniprot.org/uniprot/Q9WWA2 Q9WWA2]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=ornithine_cyclodeaminase}}
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{{#set: ec number=EC-4.3.1.12}}
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{{#set: gene associated=Tiso_gene_17134|Tiso_gene_1843}}
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{{#set: in pathway=ORN-AMINOPENTANOATE-CAT-PWY|ARG-GLU-PWY}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=in-silico_annotation}}
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Revision as of 16:20, 10 January 2018

Gene Tiso_gene_4505

  • left end position:
    • 3880
  • transcription direction:
    • POSITIVE
  • right end position:
    • 6253
  • centisome position:
    • 26.262352
  • Synonym(s):

Reactions associated

  • RXN0-1281
    • in-silico_annotation
      • automated-name-match

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=TREHALOSESYN-PWY&oldid=12446"