Difference between revisions of "PWY-5737"

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(Created page with "Category:Gene == Gene Tiso_gene_18566 == * left end position: ** 24 * transcription direction: ** POSITIVE * right end position: ** 2300 * centisome position: ** 0.8163265...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9539 RXN-9539] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-oxo-palmitoyl-[acyl-carrier...")
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_18566 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9539 RXN-9539] ==
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* left end position:
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* direction:
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** 24
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** POSITIVE
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** 3-oxo-palmitoyl-[acyl-carrier protein] synthase
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* right end position:
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** 3-oxoacyl-synthase
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** 2300
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* ec number:
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* centisome position:
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** [http://enzyme.expasy.org/EC/2.3.1.41 EC-2.3.1.41]
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** 0.8163265   
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* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[ACOA120or]]
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* With identifiers:
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** [[pantograph]]-[[creinhardtii]]
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** 1 [[Myristoyl-ACPs]][c] '''+''' 1 [[MALONYL-ACP]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[ACP]][c] '''+''' 1 [[3-oxo-palmitoyl-ACPs]][c]
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* [[ACOA140or]]
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* With common name(s):
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** [[pantograph]]-[[creinhardtii]]
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** 1 a myristoyl-[acp][c] '''+''' 1 a malonyl-[acp][c] '''+''' 1 H+[c] '''=>''' 1 CO2[c] '''+''' 1 a holo-[acyl-carrier protein][c] '''+''' 1 a 3-oxo-palmitoyl-[acp][c]
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* [[ACOA160or]]
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** [[pantograph]]-[[creinhardtii]]
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== Genes associated with this reaction  ==
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* [[ACOA40or]]
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Genes have been associated with this reaction based on different elements listed below.
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** [[pantograph]]-[[creinhardtii]]
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* [[Tiso_gene_5939]]
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* [[ACOA80or]]
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** IN-SILICO_ANNOTATION
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** [[pantograph]]-[[creinhardtii]]
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***EC-NUMBER
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* [[ACYL-COA-OXIDASE-RXN]]
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** EXPERIMENTAL_ANNOTATION
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** in-silico_annotation
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***EC-NUMBER
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***ec-number
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* [[Tiso_gene_15991]]
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** [[pantograph]]-[[esiliculosus]]
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** [[pantograph]]-[[athaliana]]
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* [[LONG-CHAIN-ACYL-COA-DEHYDROGENASE-RXN]]
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** [[pantograph]]-[[athaliana]]
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** in-silico_annotation
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***ec-number
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* [[RXN-10696]]
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** in-silico_annotation
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***ec-number
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** [[pantograph]]-[[esiliculosus]]
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−
* [[RXN-10706]]
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** in-silico_annotation
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***ec-number
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** [[pantograph]]-[[esiliculosus]]
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−
* [[RXN-10707]]
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** in-silico_annotation
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***ec-number
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** [[pantograph]]-[[esiliculosus]]
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−
* [[RXN-11026]]
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** in-silico_annotation
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−
***ec-number
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** [[pantograph]]-[[esiliculosus]]
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−
* [[RXN-11734]]
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** in-silico_annotation
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***ec-number
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−
* [[RXN-12518]]
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** in-silico_annotation
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−
***ec-number
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** [[pantograph]]-[[esiliculosus]]
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−
* [[RXN-12669]]
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** in-silico_annotation
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−
***ec-number
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** [[pantograph]]-[[esiliculosus]]
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* [[RXN-13451]]
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** in-silico_annotation
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***ec-number
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* [[RXN-13615]]
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** in-silico_annotation
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***ec-number
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* [[RXN-14131]]
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** in-silico_annotation
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−
***ec-number
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* [[RXN-14193]]
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** [[pantograph]]-[[esiliculosus]]
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−
* [[RXN-14229]]
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** in-silico_annotation
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***ec-number
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** [[pantograph]]-[[esiliculosus]]
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* [[RXN-14262]]
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** in-silico_annotation
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−
***ec-number
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−
** [[pantograph]]-[[esiliculosus]]
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* [[RXN-14278]]
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** in-silico_annotation
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−
***ec-number
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** [[pantograph]]-[[esiliculosus]]
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* [[RXN-14576]]
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** in-silico_annotation
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***ec-number
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** [[pantograph]]-[[esiliculosus]]
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* [[RXN-14771]]
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** in-silico_annotation
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***ec-number
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** [[pantograph]]-[[esiliculosus]]
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* [[RXN-14775]]
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** in-silico_annotation
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−
***ec-number
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** [[pantograph]]-[[esiliculosus]]
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* [[RXN-14785]]
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** in-silico_annotation
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−
***ec-number
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** [[pantograph]]-[[esiliculosus]]
 
** [[pantograph]]-[[esiliculosus]]
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* [[RXN-14789]]
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* [[Tiso_gene_19302]]
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** in-silico_annotation
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** [[pantograph]]-[[synechocystis]]
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***ec-number
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** [[pantograph]]-[[esiliculosus]]
 
** [[pantograph]]-[[esiliculosus]]
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* [[RXN-14796]]
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* [[Tiso_gene_14485]]
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** in-silico_annotation
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** [[pantograph]]-[[synechocystis]]
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***ec-number
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** [[pantograph]]-[[esiliculosus]]
 
** [[pantograph]]-[[esiliculosus]]
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* [[RXN-16134]]
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== Pathways  ==
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** in-silico_annotation
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* [[PWY-5971]], palmitate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971]
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***ec-number
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** '''31''' reactions found over '''31''' reactions in the full pathway
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* [[RXN-16540]]
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== Reconstruction information  ==
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** in-silico_annotation
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* [[orthology]]:
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***ec-number
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** [[pantograph]]:
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* [[RXN-16557]]
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*** [[synechocystis]]
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** in-silico_annotation
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*** [[esiliculosus]]
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***ec-number
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*** [[athaliana]]
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* [[RXN-17113]]
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* [[manual]]:
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** in-silico_annotation
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** [[primary_network]]
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***ec-number
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* [[annotation]]:
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== Pathways associated ==
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** [[pathwaytools]]:
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* [[PWY-6920]]
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*** [[experimental_annotation]]
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* [[PWY-7340]]
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*** [[in-silico_annotation]]
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* [[PWY-7656]]
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* [[PWY-7291]]
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* [[PWY-735]]
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* [[PWY-7606]]
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* [[PWY-7338]]
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* [[PWY-7094]]
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* [[PWY-6837]]
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* [[PWY66-391]]
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* [[PWY-5136]]
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* [[PWY-7726]]
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* [[PWY-7007]]
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* [[PWY-7337]]
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* [[PWY-7288]]
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* [[PWY-7654]]
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== External links  ==
 
== External links  ==
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{{#set: left end position=24}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: transcription direction=POSITIVE}}
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{{#set: common name=3-oxo-palmitoyl-[acyl-carrier protein] synthase}}
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{{#set: right end position=2300}}
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{{#set: common name=3-oxoacyl-synthase}}
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{{#set: centisome position=0.8163265    }}
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{{#set: ec number=EC-2.3.1.41}}
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{{#set: reaction associated=ACOA120or|ACOA140or|ACOA160or|ACOA40or|ACOA80or|ACYL-COA-OXIDASE-RXN|LONG-CHAIN-ACYL-COA-DEHYDROGENASE-RXN|RXN-10696|RXN-10706|RXN-10707|RXN-11026|RXN-11734|RXN-12518|RXN-12669|RXN-13451|RXN-13615|RXN-14131|RXN-14193|RXN-14229|RXN-14262|RXN-14278|RXN-14576|RXN-14771|RXN-14775|RXN-14785|RXN-14789|RXN-14796|RXN-16134|RXN-16540|RXN-16557|RXN-17113}}
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{{#set: gene associated=Tiso_gene_5939|Tiso_gene_15991|Tiso_gene_19302|Tiso_gene_14485}}
−
{{#set: pathway associated=PWY-6920|PWY-7340|PWY-7656|PWY-7291|PWY-735|PWY-7606|PWY-7338|PWY-7094|PWY-6837|PWY66-391|PWY-5136|PWY-7726|PWY-7007|PWY-7337|PWY-7288|PWY-7654}}
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{{#set: in pathway=PWY-5971}}
 +
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction tool=pantograph}}
 +
{{#set: reconstruction source=synechocystis|esiliculosus|athaliana}}
 +
{{#set: reconstruction category=manual}}
 +
{{#set: reconstruction source=primary_network}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}
 +
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}

Revision as of 16:21, 10 January 2018

Reaction RXN-9539

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 3-oxo-palmitoyl-[acyl-carrier protein] synthase
    • 3-oxoacyl-synthase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5971, palmitate biosynthesis II (bacteria and plants): PWY-5971
    • 31 reactions found over 31 reactions in the full pathway

Reconstruction information

External links

"3-oxo-palmitoyl-[acyl-carrier protein] synthase" cannot be used as a page name in this wiki.







Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-5737&oldid=12581"