Difference between revisions of "Tiso gene 12889"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=METHIONYL-TRNA-FORMYLTRANSFERASE-RXN METHIONYL-TRNA-FORMYLTRANSFERASE-RXN] == * direction: ** LEFT-...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=5.4.99.17-RXN 5.4.99.17-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF * ec number: **...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=METHIONYL-TRNA-FORMYLTRANSFERASE-RXN METHIONYL-TRNA-FORMYLTRANSFERASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=5.4.99.17-RXN 5.4.99.17-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** methionyl-trna_formyltransferase
+
** ORF
−
** ribosomal_rna_small_subunit_methyltransferase
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.1.2.9 EC-2.1.2.9]
+
** [http://enzyme.expasy.org/EC/5.4.99.17 EC-5.4.99.17]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[L-methionyl-tRNAfmet]][c] '''+''' 1 [[FORMYL-THF-GLU-N]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[N-formyl-L-methionyl-tRNAfmet]][c] '''+''' 1 [[THF-GLU-N]][c]
+
** 1 [[SQUALENE]][c] '''=>''' 1 [[HOP-2229-ENE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 an L-methionyl-[initiator tRNAmet][c] '''+''' 1 an N10-formyl-tetrahydrofolate[c] '''=>''' 1 H+[c] '''+''' 1 an N-formyl-L-methionyl-[initiator tRNAmet][c] '''+''' 1 a tetrahydrofolate[c]
+
** 1 squalene[c] '''=>''' 1 hop-22(29)-ene[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_13561]]
+
* [[Tiso_gene_12198]]
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_13560]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[Tiso_gene_9355]]
+
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-7072]], hopanoid biosynthesis (bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7072 PWY-7072]
 +
** '''1''' reactions found over '''14''' reactions in the full pathway
 +
* [[PWY-6098]], diploterol and cycloartenol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6098 PWY-6098]
 +
** '''2''' reactions found over '''4''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
 
−
** [[pantograph]]:
 
−
*** [[esiliculosus]]
 
 
* [[annotation]]:
 
* [[annotation]]:
 
** [[pathwaytools]]:
 
** [[pathwaytools]]:
−
*** [[experimental_annotation]]
 
 
*** [[in-silico_annotation]]
 
*** [[in-silico_annotation]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17637 17637]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03940 R03940]
+
** [http://www.genome.jp/dbget-bin/www_bget?R07322 R07322]
−
* UNIPROT:
+
−
** [http://www.uniprot.org/uniprot/P94463 P94463]
+
−
** [http://www.uniprot.org/uniprot/Q9PJ28 Q9PJ28]
+
−
** [http://www.uniprot.org/uniprot/P50932 P50932]
+
−
** [http://www.uniprot.org/uniprot/P47605 P47605]
+
−
** [http://www.uniprot.org/uniprot/P44787 P44787]
+
−
** [http://www.uniprot.org/uniprot/P56461 P56461]
+
−
** [http://www.uniprot.org/uniprot/Q9CEE9 Q9CEE9]
+
−
** [http://www.uniprot.org/uniprot/O51091 O51091]
+
−
** [http://www.uniprot.org/uniprot/Q9JWY9 Q9JWY9]
+
−
** [http://www.uniprot.org/uniprot/P23882 P23882]
+
−
** [http://www.uniprot.org/uniprot/P32785 P32785]
+
−
** [http://www.uniprot.org/uniprot/P75235 P75235]
+
−
** [http://www.uniprot.org/uniprot/Q55163 Q55163]
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=methionyl-trna_formyltransferase}}
+
{{#set: common name=ORF}}
−
{{#set: common name=ribosomal_rna_small_subunit_methyltransferase}}
+
{{#set: ec number=EC-5.4.99.17}}
−
{{#set: ec number=EC-2.1.2.9}}
+
{{#set: gene associated=Tiso_gene_12198}}
−
{{#set: gene associated=Tiso_gene_13561|Tiso_gene_13560|Tiso_gene_9355}}
+
{{#set: in pathway=PWY-7072|PWY-6098}}
−
{{#set: in pathway=}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=esiliculosus}}
+
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+
{{#set: reconstruction source=in-silico_annotation}}

Revision as of 16:21, 10 January 2018

Reaction 5.4.99.17-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ORF
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 squalene[c] => 1 hop-22(29)-ene[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7072, hopanoid biosynthesis (bacteria): PWY-7072
    • 1 reactions found over 14 reactions in the full pathway
  • PWY-6098, diploterol and cycloartenol biosynthesis: PWY-6098
    • 2 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





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