Difference between revisions of "Tiso gene 3686"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-102 PWY-102] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3195 TAX-3195...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8042 RXN-8042] == * direction: ** LEFT-TO-RIGHT * common name: ** carotene_isomerase ** caroten...")
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-102 PWY-102] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8042 RXN-8042] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3195 TAX-3195]
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-58023 TAX-58023]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-4751]
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* common name:
 
* common name:
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** gibberellin inactivation I (2β-hydroxylation)
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** carotene_isomerase
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** carotenoid_isomerase
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* ec number:
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** [http://enzyme.expasy.org/EC/5.2.1.13 EC-5.2.1.13]
 
* Synonym(s):
 
* Synonym(s):
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** gibberellin 2β-hydroxylation
 
  
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== Reaction(s) found ==
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== Reaction Formula ==
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* '''4''' reaction(s) found
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* With identifiers:
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** [[RXN-113]]
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** 1 [[CPD-7496]][c] '''=>''' 1 [[CPD1F-114]][c]
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** [[RXN-6550]]
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* With common name(s):
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** [[RXN-171]]
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** 1 prolycopene[c] '''=>''' 1 all-trans-lycopene[c]
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** [[RXN-115]]
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== Reaction(s) not found ==
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== Genes associated with this reaction  ==
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* '''7''' reaction(s) not found
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Genes have been associated with this reaction based on different elements listed below.
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** [http://metacyc.org/META/NEW-IMAGE?object=RXN-114 RXN-114]
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* [[Tiso_gene_13367]]
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** [http://metacyc.org/META/NEW-IMAGE?object=RXN-118 RXN-118]
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** IN-SILICO_ANNOTATION
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** [http://metacyc.org/META/NEW-IMAGE?object=RXN-292 RXN-292]
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***AUTOMATED-NAME-MATCH
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** [http://metacyc.org/META/NEW-IMAGE?object=RXN-991 RXN-991]
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* [[Tiso_gene_15802]]
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** [http://metacyc.org/META/NEW-IMAGE?object=RXN-172 RXN-172]
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** IN-SILICO_ANNOTATION
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** [http://metacyc.org/META/NEW-IMAGE?object=RXN-886 RXN-886]
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***AUTOMATED-NAME-MATCH
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** [http://metacyc.org/META/NEW-IMAGE?object=RXN-947 RXN-947]
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* [[Tiso_gene_917]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_13369]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_916]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_915]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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== Pathways  ==
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* [[PWY-6475]], trans-lycopene biosynthesis II (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6475 PWY-6475]
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** '''5''' reactions found over '''8''' reactions in the full pathway
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== Reconstruction information  ==
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[in-silico_annotation]]
 
== External links  ==
 
== External links  ==
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* ARACYC:
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* RHEA:
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** [http://metacyc.org/ARA/NEW-IMAGE?object=PWY-102 PWY-102]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30974 30974]
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{{#set: taxonomic range=TAX-3195}}
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-58023}}
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** [http://www.genome.jp/dbget-bin/www_bget?R07512 R07512]
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{{#set: taxonomic range=TAX-2}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: taxonomic range=TAX-4751}}
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{{#set: common name=carotene_isomerase}}
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{{#set: common name=gibberellin inactivation I (2β-hydroxylation)}}
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{{#set: common name=carotenoid_isomerase}}
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{{#set: common name=gibberellin 2β-hydroxylation}}
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{{#set: ec number=EC-5.2.1.13}}
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{{#set: reaction found=4}}
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{{#set: gene associated=Tiso_gene_13367|Tiso_gene_15802|Tiso_gene_917|Tiso_gene_13369|Tiso_gene_916|Tiso_gene_915}}
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{{#set: reaction not found=7}}
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{{#set: in pathway=PWY-6475}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=in-silico_annotation}}

Revision as of 16:22, 10 January 2018

Reaction RXN-8042

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • carotene_isomerase
    • carotenoid_isomerase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 prolycopene[c] => 1 all-trans-lycopene[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6475, trans-lycopene biosynthesis II (plants): PWY-6475
    • 5 reactions found over 8 reactions in the full pathway

Reconstruction information

External links





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