Difference between revisions of "H2Othu"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=MALSYN-RXN MALSYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** malate_synthase_g * ec nu...")
 
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=ADENOSYLCOBALAMIN ADENOSYLCOBALAMIN] == * smiles: ** CC%15(C=C%13(C(N%12(C%14(OC(CO)C(OP([O-])(...")
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[[Category:Reaction]]
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[[Category:Metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=MALSYN-RXN MALSYN-RXN] ==
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=ADENOSYLCOBALAMIN ADENOSYLCOBALAMIN] ==
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* direction:
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* smiles:
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** LEFT-TO-RIGHT
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** CC%15(C=C%13(C(N%12(C%14(OC(CO)C(OP([O-])(=O)OC(C)CNC(=O)CCC1(C(CC(N)=O)C2(C4(C)(C(C)(CC(N)=O)C(CCC(=O)N)C3(C(C)=C6(C(CC(=O)N)(C(CCC(N)=O)C5(C=C8(C(C)(C)C(CCC(N)=O)C7(C(C)=C1N2[Co---]([N+]=34)([N+]=56)([N+]=78)(CC9(C(C(O)C(O9)N%10(C=NC%11(C%10=NC=NC=%11N)))O))[N+](=C%12)%13))))C)))))(C))C(O)%14)))=CC(C)=%15))
 +
* inchi key:
 +
** InChIKey=ZIHHMGTYZOSFRC-YGHJOQEPSA-L
 
* common name:
 
* common name:
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** malate_synthase_g
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** adenosylcobalamin
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* ec number:
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* molecular weight:
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** [http://enzyme.expasy.org/EC/2.3.3.9 EC-2.3.3.9]
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** 1579.596   
 
* Synonym(s):
 
* Synonym(s):
 +
** coenzyme B12
 +
** cobamide coenzyme
 +
** deoxyadenosylcobalamin
 +
** cobamamide
 +
** vitamin B12
 +
** cobamamid
 +
** 5,6-dimethylbenzimidazolyl-5-deoxyadenosyl-cobamide
 +
** (5'-deoxy-5'-adenosyl)cobamide coenzyme
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** (5,6-dimethylbenzimidazolyl)cobamide coenzyme
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** 5'-deoxy-5'-adenosylcobalamin
 +
** 5'-deoxyadenosyl vitamin B12
 +
** 5'-deoxyadenosyl-5,6-dimethylbenzimidazolylcobamide
 +
** 5'-deoxyadenosylcobalamin
 +
** 5,6-dimethylbenzimidazolyl-Co-5'-deoxyadenosylcobamide
 +
** calomide
 +
** cobalamin coenzyme
 +
** dibencozide
 +
** funacomide
  
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== Reaction Formula ==
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== Reaction(s) known to consume the compound ==
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* With identifiers:
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== Reaction(s) known to produce the compound ==
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** 1 [[GLYOX]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[ACETYL-COA]][c] '''=>''' 1 [[MAL]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[CO-A]][c]
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* [[RXN-8770]]
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* With common name(s):
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* [[COBALADENOSYLTRANS-RXN]]
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** 1 glyoxylate[c] '''+''' 1 H2O[c] '''+''' 1 acetyl-CoA[c] '''=>''' 1 (S)-malate[c] '''+''' 1 H+[c] '''+''' 1 coenzyme A[c]
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== Reaction(s) of unknown directionality ==
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* [[COBALAMINSYN-RXN]]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_14377]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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== Pathways  ==
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* [[PWY-7295]], L-arabinose degradation IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7295 PWY-7295]
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** '''3''' reactions found over '''8''' reactions in the full pathway
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* [[PWY-7294]], xylose degradation IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7294 PWY-7294]
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** '''2''' reactions found over '''7''' reactions in the full pathway
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* [[GLYOXDEG-PWY]], glycolate and glyoxylate degradation II: [http://metacyc.org/META/NEW-IMAGE?object=GLYOXDEG-PWY GLYOXDEG-PWY]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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* [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase): [http://metacyc.org/META/NEW-IMAGE?object=P105-PWY P105-PWY]
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** '''9''' reactions found over '''11''' reactions in the full pathway
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* [[GLYOXYLATE-BYPASS]], glyoxylate cycle: [http://metacyc.org/META/NEW-IMAGE?object=GLYOXYLATE-BYPASS GLYOXYLATE-BYPASS]
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** '''6''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6969 PWY-6969]
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** '''9''' reactions found over '''12''' reactions in the full pathway
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* [[PWY-6728]], methylaspartate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6728 PWY-6728]
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** '''11''' reactions found over '''18''' reactions in the full pathway
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* [[PWY-7118]], chitin degradation to ethanol: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7118 PWY-7118]
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** '''4''' reactions found over '''6''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[esiliculosus]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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* CAS : 13870-90-1
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18181 18181]
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* METABOLIGHTS : MTBLC18408
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* PIR:
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* PUBCHEM:
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I40715 I40715]
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=91820207 91820207]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JX0195 JX0195]
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* HMDB : HMDB02086
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JX0196 JX0196]
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* LIGAND-CPD:
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S15387 S15387]
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** [http://www.genome.jp/dbget-bin/www_bget?C00194 C00194]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S17773 S17773]
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* CHEBI:
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S17774 S17774]
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=18408 18408]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S26645 S26645]
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* BIGG : adocbl
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S44186 S44186]
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{{#set: smiles=CC%15(C=C%13(C(N%12(C%14(OC(CO)C(OP([O-])(=O)OC(C)CNC(=O)CCC1(C(CC(N)=O)C2(C4(C)(C(C)(CC(N)=O)C(CCC(=O)N)C3(C(C)=C6(C(CC(=O)N)(C(CCC(N)=O)C5(C=C8(C(C)(C)C(CCC(N)=O)C7(C(C)=C1N2[Co---]([N+]=34)([N+]=56)([N+]=78)(CC9(C(C(O)C(O9)N%10(C=NC%11(C%10=NC=NC=%11N)))O))[N+](=C%12)%13))))C)))))(C))C(O)%14)))=CC(C)=%15))}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S48493 S48493]
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{{#set: inchi key=InChIKey=ZIHHMGTYZOSFRC-YGHJOQEPSA-L}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S51788 S51788]
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{{#set: common name=adenosylcobalamin}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=SYCNMU SYCNMU]
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{{#set: molecular weight=1579.596    }}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=SYCSM2 SYCSM2]
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{{#set: common name=coenzyme B12|cobamide coenzyme|deoxyadenosylcobalamin|cobamamide|vitamin B12|cobamamid|5,6-dimethylbenzimidazolyl-5-deoxyadenosyl-cobamide|(5'-deoxy-5'-adenosyl)cobamide coenzyme|(5,6-dimethylbenzimidazolyl)cobamide coenzyme|5'-deoxy-5'-adenosylcobalamin|5'-deoxyadenosyl vitamin B12|5'-deoxyadenosyl-5,6-dimethylbenzimidazolylcobamide|5'-deoxyadenosylcobalamin|5,6-dimethylbenzimidazolyl-Co-5'-deoxyadenosylcobamide|calomide|cobalamin coenzyme|dibencozide|funacomide}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=SYECMA SYECMA]
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{{#set: produced by=RXN-8770|COBALADENOSYLTRANS-RXN}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=SYHQMA SYHQMA]
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{{#set: consumed or produced by=COBALAMINSYN-RXN}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=SYKVMA SYKVMA]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=SYRPMA SYRPMA]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T03412 T03412]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07690 T07690]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T44752 T44752]
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* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R00472 R00472]
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−
* UNIPROT:
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** [http://www.uniprot.org/uniprot/P42450 P42450]
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** [http://www.uniprot.org/uniprot/Q02216 Q02216]
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** [http://www.uniprot.org/uniprot/P28344 P28344]
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** [http://www.uniprot.org/uniprot/P28345 P28345]
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** [http://www.uniprot.org/uniprot/P30952 P30952]
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** [http://www.uniprot.org/uniprot/Q43827 Q43827]
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** [http://www.uniprot.org/uniprot/P21826 P21826]
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** [http://www.uniprot.org/uniprot/P37330 P37330]
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** [http://www.uniprot.org/uniprot/P17432 P17432]
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** [http://www.uniprot.org/uniprot/P17815 P17815]
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** [http://www.uniprot.org/uniprot/P08997 P08997]
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** [http://www.uniprot.org/uniprot/P21360 P21360]
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** [http://www.uniprot.org/uniprot/P08216 P08216]
+
−
** [http://www.uniprot.org/uniprot/P13244 P13244]
+
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** [http://www.uniprot.org/uniprot/P49081 P49081]
+
−
** [http://www.uniprot.org/uniprot/P45458 P45458]
+
−
** [http://www.uniprot.org/uniprot/O32913 O32913]
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−
{{#set: direction=LEFT-TO-RIGHT}}
+
−
{{#set: common name=malate_synthase_g}}
+
−
{{#set: ec number=EC-2.3.3.9}}
+
−
{{#set: gene associated=Tiso_gene_14377}}
+
−
{{#set: in pathway=PWY-7295|PWY-7294|GLYOXDEG-PWY|P105-PWY|GLYOXYLATE-BYPASS|PWY-6969|PWY-6728|PWY-7118}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=esiliculosus}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+

Revision as of 16:24, 10 January 2018

Metabolite ADENOSYLCOBALAMIN

  • smiles:
    • CC%15(C=C%13(C(N%12(C%14(OC(CO)C(OP([O-])(=O)OC(C)CNC(=O)CCC1(C(CC(N)=O)C2(C4(C)(C(C)(CC(N)=O)C(CCC(=O)N)C3(C(C)=C6(C(CC(=O)N)(C(CCC(N)=O)C5(C=C8(C(C)(C)C(CCC(N)=O)C7(C(C)=C1N2[Co---]([N+]=34)([N+]=56)([N+]=78)(CC9(C(C(O)C(O9)N%10(C=NC%11(C%10=NC=NC=%11N)))O))[N+](=C%12)%13))))C)))))(C))C(O)%14)))=CC(C)=%15))
  • inchi key:
    • InChIKey=ZIHHMGTYZOSFRC-YGHJOQEPSA-L
  • common name:
    • adenosylcobalamin
  • molecular weight:
    • 1579.596
  • Synonym(s):
    • coenzyme B12
    • cobamide coenzyme
    • deoxyadenosylcobalamin
    • cobamamide
    • vitamin B12
    • cobamamid
    • 5,6-dimethylbenzimidazolyl-5-deoxyadenosyl-cobamide
    • (5'-deoxy-5'-adenosyl)cobamide coenzyme
    • (5,6-dimethylbenzimidazolyl)cobamide coenzyme
    • 5'-deoxy-5'-adenosylcobalamin
    • 5'-deoxyadenosyl vitamin B12
    • 5'-deoxyadenosyl-5,6-dimethylbenzimidazolylcobamide
    • 5'-deoxyadenosylcobalamin
    • 5,6-dimethylbenzimidazolyl-Co-5'-deoxyadenosylcobamide
    • calomide
    • cobalamin coenzyme
    • dibencozide
    • funacomide

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links

  • CAS : 13870-90-1
  • METABOLIGHTS : MTBLC18408
  • PUBCHEM:
  • HMDB : HMDB02086
  • LIGAND-CPD:
  • CHEBI:
  • BIGG : adocbl
"CC%15(C=C%13(C(N%12(C%14(OC(CO)C(OP([O-])(=O)OC(C)CNC(=O)CCC1(C(CC(N)=O)C2(C4(C)(C(C)(CC(N)=O)C(CCC(=O)N)C3(C(C)=C6(C(CC(=O)N)(C(CCC(N)=O)C5(C=C8(C(C)(C)C(CCC(N)=O)C7(C(C)=C1N2[Co---]([N+]=34)([N+]=56)([N+]=78)(CC9(C(C(O)C(O9)N%10(C=NC%11(C%10=NC=NC=%11N)))O))[N+](=C%12)%13))))C)))))(C))C(O)%14)))=CC(C)=%15))" cannot be used as a page name in this wiki.




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