Difference between revisions of "PAPS"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=TRNA-PSEUDOURIDINE-SYNTHASE-I-RXN TRNA-PSEUDOURIDINE-SYNTHASE-I-RXN] == * direction: ** LEFT-TO-RIG...")
 
(Created page with "Category:Gene == Gene Tiso_gene_16930 == * left end position: ** 1727 * transcription direction: ** POSITIVE * right end position: ** 5282 * centisome position: ** 30.1343...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=TRNA-PSEUDOURIDINE-SYNTHASE-I-RXN TRNA-PSEUDOURIDINE-SYNTHASE-I-RXN] ==
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== Gene Tiso_gene_16930 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 1727
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* common name:
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* transcription direction:
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** drap_deaminase
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** POSITIVE
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** pseudouridine_synthase_family_protein
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* right end position:
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** ORF
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** 5282
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** pseudouridine_synthase
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* centisome position:
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** Transmembrane_protein
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** 30.134356   
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** trna-pseudouridine_synthasei
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** ribosomal_large_subunit_pseudouridine_synthase_d
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** trna_pseudouridinesynthase
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** trna_pseudouridine_synthase
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** pseudouridylate_synthase
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** pseudouridine_synthase_rlu_family_protein
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** protein_pus7
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** trna_pseudouridine_synthase_a
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** pseudouridine
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** rna_pseudouridylate_synthase_domain-containing_protein_1
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** pseudouridine_synthase_1-like_protein
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** trna_pseudouridine_synthase_d
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* ec number:
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** [http://enzyme.expasy.org/EC/5.4.99.12 EC-5.4.99.12]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* [[GLUC1PURIDYLTRANS-RXN]]
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** 1 [[tRNA-uridine-38-40]][c] '''=>''' 1 [[tRNA-pseudouridine-38-40]][c]
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** in-silico_annotation
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* With common name(s):
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***automated-name-match
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** 1 a uridine38-40 in tRNA[c] '''=>''' 1 a pseudouridine38-40 in tRNA[c]
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== Pathways associated ==
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* [[PWY-7817]]
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== Genes associated with this reaction  ==
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* [[PWY-3801]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[PWY-6527]]
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* [[Tiso_gene_2851]]
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* [[PWY-7238]]
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** IN-SILICO_ANNOTATION
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* [[PWY-7343]]
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***EC-NUMBER
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* [[Tiso_gene_18184]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_10567]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_13557]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_18936]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_9833]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_3166]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_17745]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_5234]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_18028]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_19622]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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** EXPERIMENTAL_ANNOTATION
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***AUTOMATED-NAME-MATCH
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** [[pantograph]]-[[esiliculosus]]
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−
* [[Tiso_gene_178]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_17799]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_17798]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_4703]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_18959]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_11842]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_3970]]
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** IN-SILICO_ANNOTATION
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−
***EC-NUMBER
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* [[Tiso_gene_7417]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_12635]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_12093]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_4020]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_19667]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_18988]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_4021]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_3154]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_582]]
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** IN-SILICO_ANNOTATION
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−
***EC-NUMBER
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* [[Tiso_gene_7584]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_16656]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_1548]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_18987]]
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** [[pantograph]]-[[esiliculosus]]
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−
* [[Tiso_gene_5651]]
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** [[pantograph]]-[[esiliculosus]]
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−
* [[Tiso_gene_1134]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_15274]]
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** IN-SILICO_ANNOTATION
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−
***EC-NUMBER
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* [[Tiso_gene_2850]]
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** IN-SILICO_ANNOTATION
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−
***EC-NUMBER
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−
* [[Tiso_gene_2988]]
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−
** IN-SILICO_ANNOTATION
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−
***EC-NUMBER
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−
* [[Tiso_gene_11913]]
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−
** IN-SILICO_ANNOTATION
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−
***AUTOMATED-NAME-MATCH
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−
** EXPERIMENTAL_ANNOTATION
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−
***AUTOMATED-NAME-MATCH
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−
** [[pantograph]]-[[esiliculosus]]
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−
* [[Tiso_gene_16727]]
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** IN-SILICO_ANNOTATION
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−
***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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−
== Pathways  ==
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−
== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[esiliculosus]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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{{#set: left end position=1727}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03020 R03020]
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{{#set: transcription direction=POSITIVE}}
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* UNIPROT:
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{{#set: right end position=5282}}
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** [http://www.uniprot.org/uniprot/Q59069 Q59069]
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{{#set: centisome position=30.134356    }}
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** [http://www.uniprot.org/uniprot/P47428 P47428]
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{{#set: reaction associated=GLUC1PURIDYLTRANS-RXN}}
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** [http://www.uniprot.org/uniprot/P45291 P45291]
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{{#set: pathway associated=PWY-7817|PWY-3801|PWY-6527|PWY-7238|PWY-7343}}
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** [http://www.uniprot.org/uniprot/Q45557 Q45557]
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** [http://www.uniprot.org/uniprot/Q50291 Q50291]
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** [http://www.uniprot.org/uniprot/P53167 P53167]
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** [http://www.uniprot.org/uniprot/Q12211 Q12211]
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** [http://www.uniprot.org/uniprot/P73295 P73295]
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** [http://www.uniprot.org/uniprot/P07649 P07649]
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{{#set: direction=LEFT-TO-RIGHT}}
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−
{{#set: common name=drap_deaminase}}
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−
{{#set: common name=pseudouridine_synthase_family_protein}}
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−
{{#set: common name=ORF}}
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−
{{#set: common name=pseudouridine_synthase}}
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−
{{#set: common name=Transmembrane_protein}}
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−
{{#set: common name=trna-pseudouridine_synthasei}}
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{{#set: common name=ribosomal_large_subunit_pseudouridine_synthase_d}}
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−
{{#set: common name=trna_pseudouridinesynthase}}
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−
{{#set: common name=trna_pseudouridine_synthase}}
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−
{{#set: common name=pseudouridylate_synthase}}
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−
{{#set: common name=pseudouridine_synthase_rlu_family_protein}}
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−
{{#set: common name=protein_pus7}}
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−
{{#set: common name=trna_pseudouridine_synthase_a}}
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−
{{#set: common name=pseudouridine}}
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−
{{#set: common name=rna_pseudouridylate_synthase_domain-containing_protein_1}}
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−
{{#set: common name=pseudouridine_synthase_1-like_protein}}
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−
{{#set: common name=trna_pseudouridine_synthase_d}}
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−
{{#set: ec number=EC-5.4.99.12}}
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−
{{#set: gene associated=Tiso_gene_2851|Tiso_gene_18184|Tiso_gene_10567|Tiso_gene_13557|Tiso_gene_18936|Tiso_gene_9833|Tiso_gene_3166|Tiso_gene_17745|Tiso_gene_5234|Tiso_gene_18028|Tiso_gene_19622|Tiso_gene_178|Tiso_gene_17799|Tiso_gene_17798|Tiso_gene_4703|Tiso_gene_18959|Tiso_gene_11842|Tiso_gene_3970|Tiso_gene_7417|Tiso_gene_12635|Tiso_gene_12093|Tiso_gene_4020|Tiso_gene_19667|Tiso_gene_18988|Tiso_gene_4021|Tiso_gene_3154|Tiso_gene_582|Tiso_gene_7584|Tiso_gene_16656|Tiso_gene_1548|Tiso_gene_18987|Tiso_gene_5651|Tiso_gene_1134|Tiso_gene_15274|Tiso_gene_2850|Tiso_gene_2988|Tiso_gene_11913|Tiso_gene_16727}}
+
−
{{#set: in pathway=}}
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−
{{#set: reconstruction category=orthology}}
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−
{{#set: reconstruction tool=pantograph}}
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−
{{#set: reconstruction source=esiliculosus}}
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−
{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Revision as of 16:26, 10 January 2018

Gene Tiso_gene_16930

  • left end position:
    • 1727
  • transcription direction:
    • POSITIVE
  • right end position:
    • 5282
  • centisome position:
    • 30.134356
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PAPS&oldid=12957"