Difference between revisions of "PWY-2261"

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(Created page with "Category:Gene == Gene Tiso_gene_6905 == * left end position: ** 906 * transcription direction: ** POSITIVE * right end position: ** 3985 * centisome position: ** 7.7449136...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=UROGENDECARBOX-RXN UROGENDECARBOX-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** uroporphy...")
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_6905 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=UROGENDECARBOX-RXN UROGENDECARBOX-RXN] ==
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* left end position:
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* direction:
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** 906
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** POSITIVE
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** uroporphyrinogen_decarboxylase
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* right end position:
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** uroporphyrinogen_chloroplast
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** 3985
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* ec number:
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* centisome position:
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** [http://enzyme.expasy.org/EC/4.1.1.37 EC-4.1.1.37]
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** 7.7449136   
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* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[GLUTATHIONE-SYN-RXN]]
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* With identifiers:
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** in-silico_annotation
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** 4 [[PROTON]][c] '''+''' 1 [[UROPORPHYRINOGEN-III]][c] '''=>''' 4 [[CARBON-DIOXIDE]][c] '''+''' 1 [[COPROPORPHYRINOGEN_III]][c]
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***ec-number
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* With common name(s):
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== Pathways associated ==
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** 4 H+[c] '''+''' 1 uroporphyrinogen-III[c] '''=>''' 4 CO2[c] '''+''' 1 coproporphyrinogen III[c]
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* [[GLUTATHIONESYN-PWY]]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_18743]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_18744]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_19684]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_5173]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[synechocystis]]
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** [[pantograph]]-[[esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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== Pathways ==
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* [[HEMESYN2-PWY]], heme biosynthesis II (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=HEMESYN2-PWY HEMESYN2-PWY]
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** '''3''' reactions found over '''4''' reactions in the full pathway
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* [[PWY0-1415]], superpathway of heme biosynthesis from uroporphyrinogen-III: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1415 PWY0-1415]
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** '''5''' reactions found over '''6''' reactions in the full pathway
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* [[HEME-BIOSYNTHESIS-II]], heme biosynthesis I (aerobic): [http://metacyc.org/META/NEW-IMAGE?object=HEME-BIOSYNTHESIS-II HEME-BIOSYNTHESIS-II]
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** '''4''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-7766]], heme biosynthesis IV (Gram-positive bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7766 PWY-7766]
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** '''1''' reactions found over '''4''' reactions in the full pathway
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* [[CHLOROPHYLL-SYN]], 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent): [http://metacyc.org/META/NEW-IMAGE?object=CHLOROPHYLL-SYN CHLOROPHYLL-SYN]
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** '''9''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-7159]], 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7159 PWY-7159]
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** '''8''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-5531]], 3,8-divinyl-chlorophyllide a biosynthesis II (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5531 PWY-5531]
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** '''4''' reactions found over '''9''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[creinhardtii]]
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*** [[synechocystis]]
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*** [[esiliculosus]]
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* [[manual]]:
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** [[primary_network]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=906}}
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* RHEA:
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{{#set: transcription direction=POSITIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19865 19865]
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{{#set: right end position=3985}}
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* LIGAND-RXN:
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{{#set: centisome position=7.7449136    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R03197 R03197]
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{{#set: reaction associated=GLUTATHIONE-SYN-RXN}}
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* UNIPROT:
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{{#set: pathway associated=GLUTATHIONESYN-PWY}}
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** [http://www.uniprot.org/uniprot/P06132 P06132]
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** [http://www.uniprot.org/uniprot/P16891 P16891]
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** [http://www.uniprot.org/uniprot/P32395 P32395]
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** [http://www.uniprot.org/uniprot/Q9PN54 Q9PN54]
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** [http://www.uniprot.org/uniprot/Q9JV52 Q9JV52]
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** [http://www.uniprot.org/uniprot/P29680 P29680]
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** [http://www.uniprot.org/uniprot/P32347 P32347]
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** [http://www.uniprot.org/uniprot/P32920 P32920]
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** [http://www.uniprot.org/uniprot/P54224 P54224]
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** [http://www.uniprot.org/uniprot/O81220 O81220]
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** [http://www.uniprot.org/uniprot/P70697 P70697]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=uroporphyrinogen_decarboxylase}}
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{{#set: common name=uroporphyrinogen_chloroplast}}
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{{#set: ec number=EC-4.1.1.37}}
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{{#set: gene associated=Tiso_gene_18743|Tiso_gene_18744|Tiso_gene_19684|Tiso_gene_5173}}
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{{#set: in pathway=HEMESYN2-PWY|PWY0-1415|HEME-BIOSYNTHESIS-II|PWY-7766|CHLOROPHYLL-SYN|PWY-7159|PWY-5531}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=creinhardtii|synechocystis|esiliculosus}}
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{{#set: reconstruction category=manual}}
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{{#set: reconstruction source=primary_network}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}

Revision as of 16:32, 10 January 2018

Reaction UROGENDECARBOX-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • uroporphyrinogen_decarboxylase
    • uroporphyrinogen_chloroplast
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • HEMESYN2-PWY, heme biosynthesis II (anaerobic): HEMESYN2-PWY
    • 3 reactions found over 4 reactions in the full pathway
  • PWY0-1415, superpathway of heme biosynthesis from uroporphyrinogen-III: PWY0-1415
    • 5 reactions found over 6 reactions in the full pathway
  • HEME-BIOSYNTHESIS-II, heme biosynthesis I (aerobic): HEME-BIOSYNTHESIS-II
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-7766, heme biosynthesis IV (Gram-positive bacteria): PWY-7766
    • 1 reactions found over 4 reactions in the full pathway
  • CHLOROPHYLL-SYN, 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent): CHLOROPHYLL-SYN
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-7159, 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent): PWY-7159
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-5531, 3,8-divinyl-chlorophyllide a biosynthesis II (anaerobic): PWY-5531
    • 4 reactions found over 9 reactions in the full pathway

Reconstruction information

External links








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