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| − | [[Category:Reaction]] | + | [[Category:Pathway]] |
| − | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=UROGENDECARBOX-RXN UROGENDECARBOX-RXN] == | + | == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6317 PWY-6317] == |
| − | * direction: | + | * taxonomic range: |
| − | ** LEFT-TO-RIGHT | + | ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-4751] |
| | + | ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3193 TAX-3193] |
| | + | ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] |
| | * common name: | | * common name: |
| − | ** uroporphyrinogen_decarboxylase | + | ** D-galactose degradation I (Leloir pathway) |
| − | ** uroporphyrinogen_chloroplast
| + | |
| − | * ec number:
| + | |
| − | ** [http://enzyme.expasy.org/EC/4.1.1.37 EC-4.1.1.37]
| + | |
| | * Synonym(s): | | * Synonym(s): |
| | + | ** Leloir pathway |
| | | | |
| − | == Reaction Formula == | + | == Reaction(s) found == |
| − | * With identifiers: | + | * '''5''' reaction(s) found |
| − | ** 4 [[PROTON]][c] '''+''' 1 [[UROPORPHYRINOGEN-III]][c] '''=>''' 1 [[COPROPORPHYRINOGEN_III]][c] '''+''' 4 [[CARBON-DIOXIDE]][c]
| + | ** [[GALACTURIDYLYLTRANS-RXN]] |
| − | * With common name(s):
| + | ** [[ALDOSE1EPIM-RXN]] |
| − | ** 4 H+[c] '''+''' 1 uroporphyrinogen-III[c] '''=>''' 1 coproporphyrinogen III[c] '''+''' 4 CO2[c] | + | ** [[UDPGLUCEPIM-RXN]] |
| − | | + | ** [[GALACTOKIN-RXN]] |
| − | == Genes associated with this reaction ==
| + | ** [[PHOSPHOGLUCMUT-RXN]] |
| − | Genes have been associated with this reaction based on different elements listed below.
| + | == Reaction(s) not found == |
| − | * [[Tiso_gene_18744]]
| + | * '''0''' reaction(s) not found |
| − | ** IN-SILICO_ANNOTATION
| + | |
| − | ***EC-NUMBER
| + | |
| − | ** [[pantograph]]-[[esiliculosus]]
| + | |
| − | * [[Tiso_gene_5173]]
| + | |
| − | ** IN-SILICO_ANNOTATION
| + | |
| − | ***EC-NUMBER
| + | |
| − | ** EXPERIMENTAL_ANNOTATION
| + | |
| − | ***EC-NUMBER
| + | |
| − | ** [[pantograph]]-[[synechocystis]] | + | |
| − | ** [[pantograph]]-[[esiliculosus]] | + | |
| − | ** [[pantograph]]-[[creinhardtii]] | + | |
| − | * [[Tiso_gene_19684]]
| + | |
| − | ** IN-SILICO_ANNOTATION
| + | |
| − | ***EC-NUMBER
| + | |
| − | ** EXPERIMENTAL_ANNOTATION
| + | |
| − | ***EC-NUMBER
| + | |
| − | ** [[pantograph]]-[[esiliculosus]] | + | |
| − | * [[Tiso_gene_18743]]
| + | |
| − | ** IN-SILICO_ANNOTATION
| + | |
| − | ***EC-NUMBER
| + | |
| − | ** EXPERIMENTAL_ANNOTATION
| + | |
| − | ***EC-NUMBER
| + | |
| − | ** [[pantograph]]-[[esiliculosus]]
| + | |
| − | == Pathways == | + | |
| − | * [[HEMESYN2-PWY]], heme biosynthesis II (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=HEMESYN2-PWY HEMESYN2-PWY]
| + | |
| − | ** '''3''' reactions found over '''4''' reactions in the full pathway
| + | |
| − | * [[PWY0-1415]], superpathway of heme biosynthesis from uroporphyrinogen-III: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1415 PWY0-1415]
| + | |
| − | ** '''5''' reactions found over '''6''' reactions in the full pathway
| + | |
| − | * [[HEME-BIOSYNTHESIS-II]], heme biosynthesis I (aerobic): [http://metacyc.org/META/NEW-IMAGE?object=HEME-BIOSYNTHESIS-II HEME-BIOSYNTHESIS-II]
| + | |
| − | ** '''4''' reactions found over '''4''' reactions in the full pathway
| + | |
| − | * [[PWY-5531]], 3,8-divinyl-chlorophyllide a biosynthesis II (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5531 PWY-5531]
| + | |
| − | ** '''4''' reactions found over '''9''' reactions in the full pathway
| + | |
| − | * [[CHLOROPHYLL-SYN]], 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent): [http://metacyc.org/META/NEW-IMAGE?object=CHLOROPHYLL-SYN CHLOROPHYLL-SYN]
| + | |
| − | ** '''9''' reactions found over '''9''' reactions in the full pathway
| + | |
| − | * [[PWY-7766]], heme biosynthesis IV (Gram-positive bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7766 PWY-7766]
| + | |
| − | ** '''1''' reactions found over '''4''' reactions in the full pathway
| + | |
| − | * [[PWY-7159]], 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7159 PWY-7159]
| + | |
| − | ** '''8''' reactions found over '''9''' reactions in the full pathway
| + | |
| − | == Reconstruction information ==
| + | |
| − | * [[orthology]]:
| + | |
| − | ** [[pantograph]]:
| + | |
| − | *** [[creinhardtii]]
| + | |
| − | *** [[synechocystis]]
| + | |
| − | *** [[esiliculosus]]
| + | |
| − | * [[manual]]:
| + | |
| − | ** [[primary_network]]
| + | |
| − | * [[annotation]]:
| + | |
| − | ** [[pathwaytools]]:
| + | |
| − | *** [[experimental_annotation]]
| + | |
| − | *** [[in-silico_annotation]]
| + | |
| | == External links == | | == External links == |
| − | * RHEA: | + | * ARACYC: |
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19865 19865] | + | ** [http://metacyc.org/ARA/NEW-IMAGE?object=GALACTMETAB-PWY GALACTMETAB-PWY] |
| − | * LIGAND-RXN:
| + | {{#set: taxonomic range=TAX-4751}} |
| − | ** [http://www.genome.jp/dbget-bin/www_bget?R03197 R03197]
| + | {{#set: taxonomic range=TAX-3193}} |
| − | * UNIPROT:
| + | {{#set: taxonomic range=TAX-2}} |
| − | ** [http://www.uniprot.org/uniprot/P06132 P06132]
| + | {{#set: common name=D-galactose degradation I (Leloir pathway)}} |
| − | ** [http://www.uniprot.org/uniprot/P16891 P16891]
| + | {{#set: common name=Leloir pathway}} |
| − | ** [http://www.uniprot.org/uniprot/P32395 P32395]
| + | {{#set: reaction found=5}} |
| − | ** [http://www.uniprot.org/uniprot/Q9PN54 Q9PN54]
| + | {{#set: reaction not found=0}} |
| − | ** [http://www.uniprot.org/uniprot/Q9JV52 Q9JV52]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P29680 P29680]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P32347 P32347]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P32920 P32920]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P54224 P54224]
| + | |
| − | ** [http://www.uniprot.org/uniprot/O81220 O81220]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P70697 P70697]
| + | |
| − | {{#set: direction=LEFT-TO-RIGHT}} | + | |
| − | {{#set: common name=uroporphyrinogen_decarboxylase}} | + | |
| − | {{#set: common name=uroporphyrinogen_chloroplast}} | + | |
| − | {{#set: ec number=EC-4.1.1.37}} | + | |
| − | {{#set: gene associated=Tiso_gene_18744|Tiso_gene_5173|Tiso_gene_19684|Tiso_gene_18743}} | + | |
| − | {{#set: in pathway=HEMESYN2-PWY|PWY0-1415|HEME-BIOSYNTHESIS-II|PWY-5531|CHLOROPHYLL-SYN|PWY-7766|PWY-7159}}
| + | |
| − | {{#set: reconstruction category=orthology}} | + | |
| − | {{#set: reconstruction tool=pantograph}} | + | |
| − | {{#set: reconstruction source=creinhardtii|synechocystis|esiliculosus}}
| + | |
| − | {{#set: reconstruction category=manual}}
| + | |
| − | {{#set: reconstruction source=primary_network}}
| + | |
| − | {{#set: reconstruction category=annotation}}
| + | |
| − | {{#set: reconstruction tool=pathwaytools}}
| + | |
| − | {{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
| + | |
