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| | [[Category:Reaction]] | | [[Category:Reaction]] |
| − | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DCDPKIN-RXN DCDPKIN-RXN] == | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ExchangeSeed_SULFATE ExchangeSeed_SULFATE] == |
| | * direction: | | * direction: |
| − | ** LEFT-TO-RIGHT | + | ** REVERSIBLE |
| − | * common name:
| + | |
| − | ** ORF
| + | |
| − | ** nucleoside_diphosphate_kinase
| + | |
| − | ** adenylate_kinase_domain-containing_protein_1
| + | |
| − | * ec number:
| + | |
| − | ** [http://enzyme.expasy.org/EC/2.7.4.6 EC-2.7.4.6]
| + | |
| | * Synonym(s): | | * Synonym(s): |
| | | | |
| | == Reaction Formula == | | == Reaction Formula == |
| | * With identifiers: | | * With identifiers: |
| − | ** 1 [[ATP]][c] '''+''' 1 [[DCDP]][c] '''=>''' 1 [[DCTP]][c] '''+''' 1 [[ADP]][c] | + | ** 1.0 [[SULFATE]][C-BOUNDARY] '''<=>''' 1.0 [[SULFATE]][e] |
| | * With common name(s): | | * With common name(s): |
| − | ** 1 ATP[c] '''+''' 1 dCDP[c] '''=>''' 1 dCTP[c] '''+''' 1 ADP[c] | + | ** 1.0 sulfate[C-BOUNDARY] '''<=>''' 1.0 sulfate[e] |
| | | | |
| | == Genes associated with this reaction == | | == Genes associated with this reaction == |
| − | Genes have been associated with this reaction based on different elements listed below.
| |
| − | * [[Tiso_gene_16529]]
| |
| − | ** IN-SILICO_ANNOTATION
| |
| − | ***EC-NUMBER
| |
| − | ** EXPERIMENTAL_ANNOTATION
| |
| − | ***EC-NUMBER
| |
| − | ** [[pantograph]]-[[athaliana]]
| |
| − | ** [[pantograph]]-[[synechocystis]]
| |
| − | ** [[pantograph]]-[[esiliculosus]]
| |
| − | * [[Tiso_gene_9290]]
| |
| − | ** IN-SILICO_ANNOTATION
| |
| − | ***EC-NUMBER
| |
| − | * [[Tiso_gene_17271]]
| |
| − | ** IN-SILICO_ANNOTATION
| |
| − | ***EC-NUMBER
| |
| − | * [[Tiso_gene_195]]
| |
| − | ** IN-SILICO_ANNOTATION
| |
| − | ***EC-NUMBER
| |
| − | * [[Tiso_gene_17272]]
| |
| − | ** IN-SILICO_ANNOTATION
| |
| − | ***EC-NUMBER
| |
| − | * [[Tiso_gene_18224]]
| |
| − | ** IN-SILICO_ANNOTATION
| |
| − | ***EC-NUMBER
| |
| | == Pathways == | | == Pathways == |
| − | * [[PWY-7210]], pyrimidine deoxyribonucleotides biosynthesis from CTP: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7210 PWY-7210]
| |
| − | ** '''8''' reactions found over '''8''' reactions in the full pathway
| |
| − | * [[PWY-7198]], pyrimidine deoxyribonucleotides de novo biosynthesis IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7198 PWY-7198]
| |
| − | ** '''6''' reactions found over '''7''' reactions in the full pathway
| |
| − | * [[PWY-7184]], pyrimidine deoxyribonucleotides de novo biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7184 PWY-7184]
| |
| − | ** '''9''' reactions found over '''9''' reactions in the full pathway
| |
| − | * [[PWY-7197]], pyrimidine deoxyribonucleotide phosphorylation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7197 PWY-7197]
| |
| − | ** '''4''' reactions found over '''4''' reactions in the full pathway
| |
| − | * [[PWY0-166]], superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-166 PWY0-166]
| |
| − | ** '''12''' reactions found over '''17''' reactions in the full pathway
| |
| − | * [[PWY-6545]], pyrimidine deoxyribonucleotides de novo biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6545 PWY-6545]
| |
| − | ** '''8''' reactions found over '''9''' reactions in the full pathway
| |
| | == Reconstruction information == | | == Reconstruction information == |
| − | * [[orthology]]:
| |
| − | ** [[pantograph]]:
| |
| − | *** [[synechocystis]]
| |
| − | *** [[esiliculosus]]
| |
| − | *** [[athaliana]]
| |
| | * [[manual]]: | | * [[manual]]: |
| − | ** [[primary_network]] | + | ** [[added to manage seeds from boundary to extracellular compartment]] |
| − | * [[annotation]]:
| + | |
| − | ** [[pathwaytools]]:
| + | |
| − | *** [[experimental_annotation]]
| + | |
| − | *** [[in-silico_annotation]]
| + | |
| | == External links == | | == External links == |
| − | * RHEA:
| + | {{#set: direction=REVERSIBLE}} |
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27678 27678]
| + | {{#set: in pathway=}} |
| − | * LIGAND-RXN:
| + | |
| − | ** [http://www.genome.jp/dbget-bin/www_bget?R02326 R02326]
| + | |
| − | {{#set: direction=LEFT-TO-RIGHT}} | + | |
| − | {{#set: common name=ORF}}
| + | |
| − | {{#set: common name=nucleoside_diphosphate_kinase}}
| + | |
| − | {{#set: common name=adenylate_kinase_domain-containing_protein_1}}
| + | |
| − | {{#set: ec number=EC-2.7.4.6}}
| + | |
| − | {{#set: gene associated=Tiso_gene_16529|Tiso_gene_9290|Tiso_gene_17271|Tiso_gene_195|Tiso_gene_17272|Tiso_gene_18224}}
| + | |
| − | {{#set: in pathway=PWY-7210|PWY-7198|PWY-7184|PWY-7197|PWY0-166|PWY-6545}} | + | |
| − | {{#set: reconstruction category=orthology}}
| + | |
| − | {{#set: reconstruction tool=pantograph}}
| + | |
| − | {{#set: reconstruction source=synechocystis|esiliculosus|athaliana}}
| + | |
| | {{#set: reconstruction category=manual}} | | {{#set: reconstruction category=manual}} |
| − | {{#set: reconstruction source=primary_network}} | + | {{#set: reconstruction source=added to manage seeds from boundary to extracellular compartment}} |
| − | {{#set: reconstruction category=annotation}}
| + | |
| − | {{#set: reconstruction tool=pathwaytools}}
| + | |
| − | {{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
| + | |
