Difference between revisions of "CPD0-341"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-742 RXN0-742] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/6....")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=5.99.1.2-RXN 5.99.1.2-RXN] == * direction: ** REVERSIBLE * common name: ** dna_topoisomerase ** dna...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-742 RXN0-742] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=5.99.1.2-RXN 5.99.1.2-RXN] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 +
* common name:
 +
** dna_topoisomerase
 +
** dna_topoisomerase1
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/6.3.4.18 EC-6.3.4.18]
+
** [http://enzyme.expasy.org/EC/5.99.1.2 EC-5.99.1.2]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[5-PHOSPHORIBOSYL-5-AMINOIMIDAZOLE]][c] '''+''' 1 [[HCO3]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[CPD0-181]][c] '''+''' 2 [[PROTON]][c]
+
** 1 [[Negatively-super-coiled-DNAs]][c] '''<=>''' 1 [[Relaxed-DNAs]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 5-amino-1-(5-phospho-&beta;-D-ribosyl)imidazole[c] '''+''' 1 hydrogencarbonate[c] '''+''' 1 ATP[c] '''=>''' 1 phosphate[c] '''+''' 1 ADP[c] '''+''' 1 N5-carboxyaminoimidazole ribonucleotide[c] '''+''' 2 H+[c]
+
** 1 a negatively supercoiled DNA[c] '''<=>''' 1 a relaxed DNA[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_16011]]
+
* [[Tiso_gene_5747]]
−
** [[pantograph]]-[[synechocystis]]
+
** IN-SILICO_ANNOTATION
 +
***AUTOMATED-NAME-MATCH
 +
* [[Tiso_gene_1740]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_6569]]
 +
** IN-SILICO_ANNOTATION
 +
***AUTOMATED-NAME-MATCH
 +
** EXPERIMENTAL_ANNOTATION
 +
***AUTOMATED-NAME-MATCH
 +
* [[Tiso_gene_3425]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_5036]]
 +
** IN-SILICO_ANNOTATION
 +
***AUTOMATED-NAME-MATCH
 +
* [[Tiso_gene_1291]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_5035]]
 +
** IN-SILICO_ANNOTATION
 +
***AUTOMATED-NAME-MATCH
 +
* [[Tiso_gene_5748]]
 +
** IN-SILICO_ANNOTATION
 +
***AUTOMATED-NAME-MATCH
 +
* [[Tiso_gene_14333]]
 +
** IN-SILICO_ANNOTATION
 +
***AUTOMATED-NAME-MATCH
 +
* [[Tiso_gene_200]]
 +
** IN-SILICO_ANNOTATION
 +
***AUTOMATED-NAME-MATCH
 +
* [[Tiso_gene_10513]]
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_1739]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_5749]]
 +
** IN-SILICO_ANNOTATION
 +
***AUTOMATED-NAME-MATCH
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-6123]], inosine-5'-phosphate biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6123 PWY-6123]
 
−
** '''5''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-7234]], inosine-5'-phosphate biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7234 PWY-7234]
 
−
** '''4''' reactions found over '''6''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* [[orthology]]:
 
* [[orthology]]:
 
** [[pantograph]]:
 
** [[pantograph]]:
−
*** [[synechocystis]]
+
*** [[esiliculosus]]
 +
* [[annotation]]:
 +
** [[pathwaytools]]:
 +
*** [[experimental_annotation]]
 +
*** [[in-silico_annotation]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
* UNIPROT:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19317 19317]
+
** [http://www.uniprot.org/uniprot/Q7M0H8 Q7M0H8]
−
* LIGAND-RXN:
+
** [http://www.uniprot.org/uniprot/Q07050 Q07050]
−
** [http://www.genome.jp/dbget-bin/www_bget?R07404 R07404]
+
** [http://www.uniprot.org/uniprot/Q9JWZ5 Q9JWZ5]
−
{{#set: direction=LEFT-TO-RIGHT}}
+
** [http://www.uniprot.org/uniprot/Q59046 Q59046]
−
{{#set: ec number=EC-6.3.4.18}}
+
** [http://www.uniprot.org/uniprot/Q9PLZ2 Q9PLZ2]
−
{{#set: gene associated=Tiso_gene_16011}}
+
** [http://www.uniprot.org/uniprot/P47368 P47368]
−
{{#set: in pathway=PWY-6123|PWY-7234}}
+
** [http://www.uniprot.org/uniprot/Q9CG80 Q9CG80]
 +
** [http://www.uniprot.org/uniprot/P43704 P43704]
 +
** [http://www.uniprot.org/uniprot/P43012 P43012]
 +
** [http://www.uniprot.org/uniprot/P0A620 P0A620]
 +
** [http://www.uniprot.org/uniprot/P04786 P04786]
 +
** [http://www.uniprot.org/uniprot/P13099 P13099]
 +
** [http://www.uniprot.org/uniprot/P06612 P06612]
 +
** [http://www.uniprot.org/uniprot/P11387 P11387]
 +
** [http://www.uniprot.org/uniprot/P07799 P07799]
 +
** [http://www.uniprot.org/uniprot/P93119 P93119]
 +
** [http://www.uniprot.org/uniprot/O13463 O13463]
 +
** [http://www.uniprot.org/uniprot/Q94705 Q94705]
 +
** [http://www.uniprot.org/uniprot/Q04750 Q04750]
 +
** [http://www.uniprot.org/uniprot/P14294 P14294]
 +
** [http://www.uniprot.org/uniprot/P30181 P30181]
 +
** [http://www.uniprot.org/uniprot/P34185 P34185]
 +
** [http://www.uniprot.org/uniprot/P30189 P30189]
 +
** [http://www.uniprot.org/uniprot/P40114 P40114]
 +
** [http://www.uniprot.org/uniprot/P41511 P41511]
 +
** [http://www.uniprot.org/uniprot/Q8I3Z9 Q8I3Z9]
 +
** [http://www.uniprot.org/uniprot/Q26024 Q26024]
 +
** [http://www.uniprot.org/uniprot/Q27529 Q27529]
 +
** [http://www.uniprot.org/uniprot/P41512 P41512]
 +
** [http://www.uniprot.org/uniprot/O24307 O24307]
 +
** [http://www.uniprot.org/uniprot/P71196 P71196]
 +
** [http://www.uniprot.org/uniprot/O70157 O70157]
 +
** [http://www.uniprot.org/uniprot/O60126 O60126]
 +
** [http://www.uniprot.org/uniprot/O61660 O61660]
 +
{{#set: direction=REVERSIBLE}}
 +
{{#set: common name=dna_topoisomerase}}
 +
{{#set: common name=dna_topoisomerase1}}
 +
{{#set: ec number=EC-5.99.1.2}}
 +
{{#set: gene associated=Tiso_gene_5747|Tiso_gene_1740|Tiso_gene_6569|Tiso_gene_3425|Tiso_gene_5036|Tiso_gene_1291|Tiso_gene_5035|Tiso_gene_5748|Tiso_gene_14333|Tiso_gene_200|Tiso_gene_10513|Tiso_gene_1739|Tiso_gene_5749}}
 +
{{#set: in pathway=}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=synechocystis}}
+
{{#set: reconstruction source=esiliculosus}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}
 +
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}

Revision as of 16:43, 10 January 2018

Reaction 5.99.1.2-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • dna_topoisomerase
    • dna_topoisomerase1
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links







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