Difference between revisions of "GTCY"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACETYLORNTRANSAM-RXN ACETYLORNTRANSAM-RXN] == * direction: ** REVERSIBLE * common name: ** acetylor...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ORNCARBAMTRANSFER-RXN ORNCARBAMTRANSFER-RXN] == * direction: ** REVERSIBLE * ec number: ** [http://...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACETYLORNTRANSAM-RXN ACETYLORNTRANSAM-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ORNCARBAMTRANSFER-RXN ORNCARBAMTRANSFER-RXN] ==
 
* direction:
 
* direction:
 
** REVERSIBLE
 
** REVERSIBLE
−
* common name:
 
−
** acetylornithine_aminotransferase
 
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.6.1.11 EC-2.6.1.11]
+
** [http://enzyme.expasy.org/EC/2.1.3.3 EC-2.1.3.3]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[N-ALPHA-ACETYLORNITHINE]][c] '''<=>''' 1 [[CPD-469]][c] '''+''' 1 [[GLT]][c]
+
** 1 [[CARBAMOYL-P]][c] '''+''' 1 [[L-ORNITHINE]][c] '''<=>''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c] '''+''' 1 [[L-CITRULLINE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 2-oxoglutarate[c] '''+''' 1 N-acetyl-L-ornithine[c] '''<=>''' 1 N-acetyl-L-glutamate 5-semialdehyde[c] '''+''' 1 L-glutamate[c]
+
** 1 carbamoyl phosphate[c] '''+''' 1 L-ornithine[c] '''<=>''' 1 H+[c] '''+''' 1 phosphate[c] '''+''' 1 L-citrulline[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_11231]]
+
* [[Tiso_gene_18444]]
−
** IN-SILICO_ANNOTATION
+
** EXPERIMENTAL_ANNOTATION
−
***AUTOMATED-NAME-MATCH
+
***EC-NUMBER
 +
** [[pantograph]]-[[athaliana]]
 +
** [[pantograph]]-[[athaliana]]
 +
** [[pantograph]]-[[athaliana]]
 
** [[pantograph]]-[[synechocystis]]
 
** [[pantograph]]-[[synechocystis]]
 
** [[pantograph]]-[[esiliculosus]]
 
** [[pantograph]]-[[esiliculosus]]
 +
** [[pantograph]]-[[creinhardtii]]
 +
** [[pantograph]]-[[creinhardtii]]
 
** [[pantograph]]-[[creinhardtii]]
 
** [[pantograph]]-[[creinhardtii]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-5154]], L-arginine biosynthesis III (via N-acetyl-L-citrulline): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5154 PWY-5154]
+
* [[ARGSYN-PWY]], L-arginine biosynthesis I (via L-ornithine): [http://metacyc.org/META/NEW-IMAGE?object=ARGSYN-PWY ARGSYN-PWY]
−
** '''7''' reactions found over '''9''' reactions in the full pathway
+
** '''5''' reactions found over '''6''' reactions in the full pathway
−
* [[GLUTORN-PWY]], L-ornithine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=GLUTORN-PWY GLUTORN-PWY]
+
* [[PWY-4984]], urea cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-4984 PWY-4984]
 
** '''5''' reactions found over '''5''' reactions in the full pathway
 
** '''5''' reactions found over '''5''' reactions in the full pathway
 
* [[ARGSYNBSUB-PWY]], L-arginine biosynthesis II (acetyl cycle): [http://metacyc.org/META/NEW-IMAGE?object=ARGSYNBSUB-PWY ARGSYNBSUB-PWY]
 
* [[ARGSYNBSUB-PWY]], L-arginine biosynthesis II (acetyl cycle): [http://metacyc.org/META/NEW-IMAGE?object=ARGSYNBSUB-PWY ARGSYNBSUB-PWY]
 
** '''9''' reactions found over '''9''' reactions in the full pathway
 
** '''9''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-4981]], L-proline biosynthesis II (from arginine): [http://metacyc.org/META/NEW-IMAGE?object=PWY-4981 PWY-4981]
 +
** '''4''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-7400]], L-arginine biosynthesis IV (archaebacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7400 PWY-7400]
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 +
* [[CITRULLINE-DEG-PWY]], L-citrulline degradation: [http://metacyc.org/META/NEW-IMAGE?object=CITRULLINE-DEG-PWY CITRULLINE-DEG-PWY]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[CITRULBIO-PWY]], L-citrulline biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=CITRULBIO-PWY CITRULBIO-PWY]
 +
** '''8''' reactions found over '''8''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* [[orthology]]:
 
* [[orthology]]:
Line 36: Line 47:
 
*** [[synechocystis]]
 
*** [[synechocystis]]
 
*** [[esiliculosus]]
 
*** [[esiliculosus]]
 +
*** [[athaliana]]
 +
* [[manual]]:
 +
** [[primary_network]]
 
* [[annotation]]:
 
* [[annotation]]:
 
** [[pathwaytools]]:
 
** [[pathwaytools]]:
 +
*** [[experimental_annotation]]
 
*** [[in-silico_annotation]]
 
*** [[in-silico_annotation]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18049 18049]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19513 19513]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R02283 R02283]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01398 R01398]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P18335 P18335]
+
** [http://www.uniprot.org/uniprot/Q58291 Q58291]
−
** [http://www.uniprot.org/uniprot/Q9PIR7 Q9PIR7]
+
** [http://www.uniprot.org/uniprot/Q9CHD1 Q9CHD1]
−
** [http://www.uniprot.org/uniprot/Q9JTX9 Q9JTX9]
+
** [http://www.uniprot.org/uniprot/Q7M182 Q7M182]
−
** [http://www.uniprot.org/uniprot/Q9CHD3 Q9CHD3]
+
** [http://www.uniprot.org/uniprot/Q9JTI4 Q9JTI4]
−
** [http://www.uniprot.org/uniprot/P30900 P30900]
+
** [http://www.uniprot.org/uniprot/P11727 P11727]
−
** [http://www.uniprot.org/uniprot/P18544 P18544]
+
** [http://www.uniprot.org/uniprot/Q9CEY4 Q9CEY4]
−
** [http://www.uniprot.org/uniprot/O74548 O74548]
+
** [http://www.uniprot.org/uniprot/Q9CE14 Q9CE14]
−
** [http://www.uniprot.org/uniprot/O14433 O14433]
+
** [http://www.uniprot.org/uniprot/Q9PNU6 Q9PNU6]
 +
** [http://www.uniprot.org/uniprot/P44770 P44770]
 +
** [http://www.uniprot.org/uniprot/Q9YHY9 Q9YHY9]
 +
** [http://www.uniprot.org/uniprot/P11066 P11066]
 +
** [http://www.uniprot.org/uniprot/P11803 P11803]
 +
** [http://www.uniprot.org/uniprot/P18186 P18186]
 +
** [http://www.uniprot.org/uniprot/P05150 P05150]
 +
** [http://www.uniprot.org/uniprot/P14995 P14995]
 +
** [http://www.uniprot.org/uniprot/P06960 P06960]
 +
** [http://www.uniprot.org/uniprot/P04391 P04391]
 +
** [http://www.uniprot.org/uniprot/P00480 P00480]
 +
** [http://www.uniprot.org/uniprot/P11725 P11725]
 +
** [http://www.uniprot.org/uniprot/P21302 P21302]
 +
** [http://www.uniprot.org/uniprot/P11724 P11724]
 +
** [http://www.uniprot.org/uniprot/P08308 P08308]
 +
** [http://www.uniprot.org/uniprot/P68747 P68747]
 +
** [http://www.uniprot.org/uniprot/P00481 P00481]
 +
** [http://www.uniprot.org/uniprot/P31317 P31317]
 +
** [http://www.uniprot.org/uniprot/Q01322 Q01322]
 +
** [http://www.uniprot.org/uniprot/Q01323 Q01323]
 +
** [http://www.uniprot.org/uniprot/Q01324 Q01324]
 +
** [http://www.uniprot.org/uniprot/Q01326 Q01326]
 +
** [http://www.uniprot.org/uniprot/Q01325 Q01325]
 +
** [http://www.uniprot.org/uniprot/Q9JYI3 Q9JYI3]
 +
** [http://www.uniprot.org/uniprot/Q01327 Q01327]
 +
** [http://www.uniprot.org/uniprot/P0A5M9 P0A5M9]
 +
** [http://www.uniprot.org/uniprot/Q02047 Q02047]
 +
** [http://www.uniprot.org/uniprot/Q9TRC9 Q9TRC9]
 +
** [http://www.uniprot.org/uniprot/Q48296 Q48296]
 +
** [http://www.uniprot.org/uniprot/P75473 P75473]
 +
** [http://www.uniprot.org/uniprot/Q49080 Q49080]
 +
** [http://www.uniprot.org/uniprot/Q43814 Q43814]
 +
** [http://www.uniprot.org/uniprot/O53089 O53089]
 +
** [http://www.uniprot.org/uniprot/O50039 O50039]
 
{{#set: direction=REVERSIBLE}}
 
{{#set: direction=REVERSIBLE}}
−
{{#set: common name=acetylornithine_aminotransferase}}
+
{{#set: ec number=EC-2.1.3.3}}
−
{{#set: ec number=EC-2.6.1.11}}
+
{{#set: gene associated=Tiso_gene_18444}}
−
{{#set: gene associated=Tiso_gene_11231}}
+
{{#set: in pathway=ARGSYN-PWY|PWY-4984|ARGSYNBSUB-PWY|PWY-4981|PWY-7400|CITRULLINE-DEG-PWY|CITRULBIO-PWY}}
−
{{#set: in pathway=PWY-5154|GLUTORN-PWY|ARGSYNBSUB-PWY}}
+
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=creinhardtii|synechocystis|esiliculosus}}
+
{{#set: reconstruction source=creinhardtii|synechocystis|esiliculosus|athaliana}}
 +
{{#set: reconstruction category=manual}}
 +
{{#set: reconstruction source=primary_network}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction source=in-silico_annotation}}
+
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}

Revision as of 17:46, 10 January 2018

Reaction ORNCARBAMTRANSFER-RXN

  • direction:
    • REVERSIBLE
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 carbamoyl phosphate[c] + 1 L-ornithine[c] <=> 1 H+[c] + 1 phosphate[c] + 1 L-citrulline[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • ARGSYN-PWY, L-arginine biosynthesis I (via L-ornithine): ARGSYN-PWY
    • 5 reactions found over 6 reactions in the full pathway
  • PWY-4984, urea cycle: PWY-4984
    • 5 reactions found over 5 reactions in the full pathway
  • ARGSYNBSUB-PWY, L-arginine biosynthesis II (acetyl cycle): ARGSYNBSUB-PWY
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-4981, L-proline biosynthesis II (from arginine): PWY-4981
    • 4 reactions found over 6 reactions in the full pathway
  • PWY-7400, L-arginine biosynthesis IV (archaebacteria): PWY-7400
    • 7 reactions found over 9 reactions in the full pathway
  • CITRULLINE-DEG-PWY, L-citrulline degradation: CITRULLINE-DEG-PWY
    • 2 reactions found over 2 reactions in the full pathway
  • CITRULBIO-PWY, L-citrulline biosynthesis: CITRULBIO-PWY
    • 8 reactions found over 8 reactions in the full pathway

Reconstruction information

External links







Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=GTCY&oldid=14520"