Difference between revisions of "RXNN-404"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7904 RXN-7904] == * direction: ** LEFT-TO-RIGHT * common name: ** polyketide_synthase ** acyl-_...")
 
(Created page with "Category:Gene == Gene Tiso_gene_1104 == * left end position: ** 24677 * transcription direction: ** POSITIVE * right end position: ** 26030 * centisome position: ** 94.780...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7904 RXN-7904] ==
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== Gene Tiso_gene_1104 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 24677
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* common name:
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* transcription direction:
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** polyketide_synthase
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** POSITIVE
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** acyl-_synthetase
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* right end position:
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** long_chain_acyl-_synthetase
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** 26030
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** ORF
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* centisome position:
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* ec number:
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** 94.780304   
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** [http://enzyme.expasy.org/EC/6.2.1.3 EC-6.2.1.3]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* [[GSHTRAN-RXN]]
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** 1 [[Long-Chain-Fatty-Acids]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[Long-Chain-Acyl-CoAs]][c]
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** in-silico_annotation
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* With common name(s):
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***ec-number
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** 1 a long-chain fatty acid[c] '''+''' 1 ATP[c] '''+''' 1 coenzyme A[c] '''=>''' 1 AMP[c] '''+''' 1 diphosphate[c] '''+''' 1 a long-chain acyl-CoA[c]
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** [[pantograph]]-[[athaliana]]
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* [[GST-RXN]]
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== Genes associated with this reaction  ==
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** in-silico_annotation
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Genes have been associated with this reaction based on different elements listed below.
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***ec-number
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* [[Tiso_gene_13394]]
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* [[RXN-13673]]
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** IN-SILICO_ANNOTATION
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** in-silico_annotation
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***EC-NUMBER
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***ec-number
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* [[Tiso_gene_9394]]
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* [[RXN-15680]]
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** IN-SILICO_ANNOTATION
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** in-silico_annotation
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***EC-NUMBER
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***ec-number
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** EXPERIMENTAL_ANNOTATION
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== Pathways associated ==
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***EC-NUMBER
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* [[PWY-7112]]
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** [[pantograph]]-[[esiliculosus]]
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* [[PWY-6842]]
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* [[Tiso_gene_7855]]
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* [[PWY-4061]]
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** IN-SILICO_ANNOTATION
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* [[PWY-7533]]
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***EC-NUMBER
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* [[Tiso_gene_500]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_10876]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_136]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_348]]
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** IN-SILICO_ANNOTATION
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−
***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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−
***EC-NUMBER
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* [[Tiso_gene_4191]]
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** IN-SILICO_ANNOTATION
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−
***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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−
***EC-NUMBER
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* [[Tiso_gene_135]]
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** IN-SILICO_ANNOTATION
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−
***EC-NUMBER
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== Pathways ==
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* [[PWY-5143]], long-chain fatty acid activation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5143 PWY-5143]
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** '''1''' reactions found over '''1''' reactions in the full pathway
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* [[PWY-6803]], phosphatidylcholine acyl editing: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6803 PWY-6803]
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** '''3''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-6873]], long chain fatty acid ester synthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6873 PWY-6873]
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** '''1''' reactions found over '''4''' reactions in the full pathway
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−
* [[PWY-7033]], alkane biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7033 PWY-7033]
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** '''1''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-5885]], wax esters biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5885 PWY-5885]
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** '''1''' reactions found over '''4''' reactions in the full pathway
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−
== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[esiliculosus]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* PIR:
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{{#set: left end position=24677}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A36275 A36275]
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{{#set: transcription direction=POSITIVE}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A54901 A54901]
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{{#set: right end position=26030}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A70117 A70117]
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{{#set: centisome position=94.780304    }}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B54901 B54901]
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{{#set: reaction associated=GSHTRAN-RXN|GST-RXN|RXN-13673|RXN-15680}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B75585 B75585]
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{{#set: pathway associated=PWY-7112|PWY-6842|PWY-4061|PWY-7533}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C70762 C70762]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C71361 C71361]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C75364 C75364]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=D69649 D69649]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=D72605 D72605]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=F86707 F86707]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G81798 G81798]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H64041 H64041]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H69274 H69274]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H70173 H70173]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H81068 H81068]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JE0262 JE0262]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JX0202 JX0202]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JX0205 JX0205]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S23052 S23052]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S23467 S23467]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S41589 S41589]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S49487 S49487]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S56060 S56060]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S74984 S74984]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T01875 T01875]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T02834 T02834]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07928 T07928]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07929 T07929]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07944 T07944]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T08182 T08182]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T08904 T08904]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T34994 T34994]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T35430 T35430]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T35513 T35513]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T39766 T39766]
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−
* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R00390 R00390]
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−
* UNIPROT:
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** [http://www.uniprot.org/uniprot/O60135 O60135]
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** [http://www.uniprot.org/uniprot/Q9X7Z0 Q9X7Z0]
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** [http://www.uniprot.org/uniprot/Q9X7Y5 Q9X7Y5]
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** [http://www.uniprot.org/uniprot/Q9ZBW6 Q9ZBW6]
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** [http://www.uniprot.org/uniprot/Q9T0A0 Q9T0A0]
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** [http://www.uniprot.org/uniprot/Q9T009 Q9T009]
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** [http://www.uniprot.org/uniprot/Q96338 Q96338]
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** [http://www.uniprot.org/uniprot/Q96538 Q96538]
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** [http://www.uniprot.org/uniprot/Q96537 Q96537]
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** [http://www.uniprot.org/uniprot/O15840 O15840]
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** [http://www.uniprot.org/uniprot/O81614 O81614]
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** [http://www.uniprot.org/uniprot/P73004 P73004]
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** [http://www.uniprot.org/uniprot/P47912 P47912]
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** [http://www.uniprot.org/uniprot/Q8JZR0 Q8JZR0]
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** [http://www.uniprot.org/uniprot/P69452 P69452]
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** [http://www.uniprot.org/uniprot/P69451 P69451]
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−
** [http://www.uniprot.org/uniprot/Q02602 Q02602]
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** [http://www.uniprot.org/uniprot/P30624 P30624]
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** [http://www.uniprot.org/uniprot/P33124 P33124]
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−
** [http://www.uniprot.org/uniprot/P33121 P33121]
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** [http://www.uniprot.org/uniprot/Q9JYJ7 Q9JYJ7]
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−
** [http://www.uniprot.org/uniprot/O51539 O51539]
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−
** [http://www.uniprot.org/uniprot/O30039 O30039]
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** [http://www.uniprot.org/uniprot/P44446 P44446]
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−
** [http://www.uniprot.org/uniprot/Q9JTK0 Q9JTK0]
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−
** [http://www.uniprot.org/uniprot/Q9CHR0 Q9CHR0]
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** [http://www.uniprot.org/uniprot/Q9YCF0 Q9YCF0]
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−
** [http://www.uniprot.org/uniprot/P94547 P94547]
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** [http://www.uniprot.org/uniprot/Q9RTR4 Q9RTR4]
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** [http://www.uniprot.org/uniprot/O83181 O83181]
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** [http://www.uniprot.org/uniprot/Q10776 Q10776]
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** [http://www.uniprot.org/uniprot/Q9RYK3 Q9RYK3]
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** [http://www.uniprot.org/uniprot/P39002 P39002]
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** [http://www.uniprot.org/uniprot/O51162 O51162]
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** [http://www.uniprot.org/uniprot/P39518 P39518]
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** [http://www.uniprot.org/uniprot/P18163 P18163]
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−
{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=polyketide_synthase}}
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−
{{#set: common name=acyl-_synthetase}}
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{{#set: common name=long_chain_acyl-_synthetase}}
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−
{{#set: common name=ORF}}
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−
{{#set: ec number=EC-6.2.1.3}}
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−
{{#set: gene associated=Tiso_gene_13394|Tiso_gene_9394|Tiso_gene_7855|Tiso_gene_500|Tiso_gene_10876|Tiso_gene_136|Tiso_gene_348|Tiso_gene_4191|Tiso_gene_135}}
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−
{{#set: in pathway=PWY-5143|PWY-6803|PWY-6873|PWY-7033|PWY-5885}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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−
{{#set: reconstruction source=esiliculosus}}
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−
{{#set: reconstruction category=annotation}}
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−
{{#set: reconstruction tool=pathwaytools}}
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−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Revision as of 16:48, 10 January 2018

Gene Tiso_gene_1104

  • left end position:
    • 24677
  • transcription direction:
    • POSITIVE
  • right end position:
    • 26030
  • centisome position:
    • 94.780304
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXNN-404&oldid=14722"