Difference between revisions of "L-seryl-SEC-tRNAs"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14394 RXN-14394] == * direction: ** LEFT-TO-RIGHT * common name: ** acetyl-_c-acetyltransferase...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7657 RXN-7657] == * direction: ** REVERSIBLE * common name: ** polyketide_synthase ** ORF * ec...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14394 RXN-14394] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7657 RXN-7657] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** acetyl-_c-acetyltransferase
+
** polyketide_synthase
−
** 3-ketoacyl-_thiolase
+
** ORF
−
** thiolase
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.3.1.16 EC-2.3.1.16]
+
** [http://enzyme.expasy.org/EC/1.1.1.1 EC-1.1.1.1]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[CO-A]][c] '''+''' 1 [[CPD-15244]][c] '''=>''' 1 [[CPD-7221]][c] '''+''' 1 [[ACETYL-COA]][c]
+
** 1 [[NAD]][c] '''+''' 1 [[ISOBUTANOL]][c] '''<=>''' 1 [[PROTON]][c] '''+''' 1 [[CPD-7000]][c] '''+''' 1 [[NADH]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 coenzyme A[c] '''+''' 1 3-oxo-(5Z)-tetradecenoyl-CoA[c] '''=>''' 1 3-cis-dodecenoyl-CoA[c] '''+''' 1 acetyl-CoA[c]
+
** 1 NAD+[c] '''+''' 1 isobutanol[c] '''<=>''' 1 H+[c] '''+''' 1 isobutanal[c] '''+''' 1 NADH[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_10116]]
+
* [[Tiso_gene_7649]]
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
−
** EXPERIMENTAL_ANNOTATION
+
* [[Tiso_gene_6563]]
 +
** IN-SILICO_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
−
* [[Tiso_gene_17451]]
+
* [[Tiso_gene_6562]]
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
−
** EXPERIMENTAL_ANNOTATION
+
* [[Tiso_gene_5425]]
−
***EC-NUMBER
+
−
* [[Tiso_gene_3855]]
+
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
−
** EXPERIMENTAL_ANNOTATION
+
* [[Tiso_gene_5424]]
−
***EC-NUMBER
+
−
* [[Tiso_gene_15327]]
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_3856]]
+
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-7396]], butanol and isobutanol biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7396 PWY-7396]
 +
** '''4''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-7111]], pyruvate fermentation to isobutanol (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7111 PWY-7111]
 +
** '''4''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-5057]], L-valine degradation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5057 PWY-5057]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* [[annotation]]:
 
* [[annotation]]:
 
** [[pathwaytools]]:
 
** [[pathwaytools]]:
−
*** [[experimental_annotation]]
 
 
*** [[in-silico_annotation]]
 
*** [[in-silico_annotation]]
 
== External links  ==
 
== External links  ==
−
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: direction=REVERSIBLE}}
−
{{#set: common name=acetyl-_c-acetyltransferase}}
+
{{#set: common name=polyketide_synthase}}
−
{{#set: common name=3-ketoacyl-_thiolase}}
+
{{#set: common name=ORF}}
−
{{#set: common name=thiolase}}
+
{{#set: ec number=EC-1.1.1.1}}
−
{{#set: ec number=EC-2.3.1.16}}
+
{{#set: gene associated=Tiso_gene_7649|Tiso_gene_6563|Tiso_gene_6562|Tiso_gene_5425|Tiso_gene_5424}}
−
{{#set: gene associated=Tiso_gene_10116|Tiso_gene_17451|Tiso_gene_3855|Tiso_gene_15327|Tiso_gene_3856}}
+
{{#set: in pathway=PWY-7396|PWY-7111|PWY-5057}}
−
{{#set: in pathway=}}
+
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+
{{#set: reconstruction source=in-silico_annotation}}

Revision as of 16:49, 10 January 2018

Reaction RXN-7657

  • direction:
    • REVERSIBLE
  • common name:
    • polyketide_synthase
    • ORF
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 NAD+[c] + 1 isobutanol[c] <=> 1 H+[c] + 1 isobutanal[c] + 1 NADH[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7396, butanol and isobutanol biosynthesis (engineered): PWY-7396
    • 4 reactions found over 8 reactions in the full pathway
  • PWY-7111, pyruvate fermentation to isobutanol (engineered): PWY-7111
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-5057, L-valine degradation II: PWY-5057
    • 2 reactions found over 3 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=L-seryl-SEC-tRNAs&oldid=14823"