Difference between revisions of "D-ALANINE"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PROLINE--TRNA-LIGASE-RXN PROLINE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name:...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=LINOLENOYL-RXN LINOLENOYL-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** long_chain_acyl-_...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PROLINE--TRNA-LIGASE-RXN PROLINE--TRNA-LIGASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=LINOLENOYL-RXN LINOLENOYL-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
 +
** long_chain_acyl-_synthetase
 +
** polyketide_synthase
 +
** acyl-_synthetase
 
** ORF
 
** ORF
−
** prolyl-trna_synthetase
 
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/6.1.1.15 EC-6.1.1.15]
+
** [http://enzyme.expasy.org/EC/6.2.1.3 EC-6.2.1.3]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[ATP]][c] '''+''' 1 [[PRO-tRNAs]][c] '''+''' 1 [[PRO]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[Charged-PRO-tRNAs]][c]
+
** 1 [[ATP]][c] '''+''' 1 [[LINOLENIC_ACID]][c] '''+''' 1 [[CO-A]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[LINOLENOYL-COA]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 ATP[c] '''+''' 1 a tRNApro[c] '''+''' 1 L-proline[c] '''=>''' 1 diphosphate[c] '''+''' 1 AMP[c] '''+''' 1 an L-prolyl-[tRNApro][c]
+
** 1 ATP[c] '''+''' 1 α-linolenate[c] '''+''' 1 coenzyme A[c] '''=>''' 1 AMP[c] '''+''' 1 diphosphate[c] '''+''' 1 α-linolenoyl-CoA[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_11974]]
+
* [[Tiso_gene_7855]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_136]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_135]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_4191]]
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
 
** EXPERIMENTAL_ANNOTATION
 
** EXPERIMENTAL_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
−
* [[Tiso_gene_14791]]
+
* [[Tiso_gene_500]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_13394]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_348]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_9394]]
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
Line 29: Line 51:
 
***EC-NUMBER
 
***EC-NUMBER
 
** [[pantograph]]-[[esiliculosus]]
 
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_10876]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
+
* [[PWY-7049]], icosapentaenoate biosynthesis II (6-desaturase, mammals): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7049 PWY-7049]
−
** '''21''' reactions found over '''21''' reactions in the full pathway
+
** '''2''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7724]], icosapentaenoate biosynthesis III (8-desaturase, mammals): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7724 PWY-7724]
 +
** '''5''' reactions found over '''7''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* [[orthology]]:
 
* [[orthology]]:
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*** [[in-silico_annotation]]
 
*** [[in-silico_annotation]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14305 14305]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R03661 R03661]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/O51363 O51363]
 
−
** [http://www.uniprot.org/uniprot/O58734 O58734]
 
−
** [http://www.uniprot.org/uniprot/Q9ZMJ6 Q9ZMJ6]
 
−
** [http://www.uniprot.org/uniprot/P43830 P43830]
 
−
** [http://www.uniprot.org/uniprot/P47525 P47525]
 
−
** [http://www.uniprot.org/uniprot/O26708 O26708]
 
−
** [http://www.uniprot.org/uniprot/Q9JU09 Q9JU09]
 
−
** [http://www.uniprot.org/uniprot/Q58635 Q58635]
 
−
** [http://www.uniprot.org/uniprot/P56124 P56124]
 
−
** [http://www.uniprot.org/uniprot/O83195 O83195]
 
−
** [http://www.uniprot.org/uniprot/Q9Z851 Q9Z851]
 
−
** [http://www.uniprot.org/uniprot/O31755 O31755]
 
−
** [http://www.uniprot.org/uniprot/P36431 P36431]
 
−
** [http://www.uniprot.org/uniprot/Q9ZDE7 Q9ZDE7]
 
−
** [http://www.uniprot.org/uniprot/Q9PHX1 Q9PHX1]
 
−
** [http://www.uniprot.org/uniprot/Q9CDT4 Q9CDT4]
 
−
** [http://www.uniprot.org/uniprot/Q9WYY4 Q9WYY4]
 
−
** [http://www.uniprot.org/uniprot/P75382 P75382]
 
−
** [http://www.uniprot.org/uniprot/Q49090 Q49090]
 
−
** [http://www.uniprot.org/uniprot/P07814 P07814]
 
−
** [http://www.uniprot.org/uniprot/P16659 P16659]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=long_chain_acyl-_synthetase}}
 +
{{#set: common name=polyketide_synthase}}
 +
{{#set: common name=acyl-_synthetase}}
 
{{#set: common name=ORF}}
 
{{#set: common name=ORF}}
−
{{#set: common name=prolyl-trna_synthetase}}
+
{{#set: ec number=EC-6.2.1.3}}
−
{{#set: ec number=EC-6.1.1.15}}
+
{{#set: gene associated=Tiso_gene_7855|Tiso_gene_136|Tiso_gene_135|Tiso_gene_4191|Tiso_gene_500|Tiso_gene_13394|Tiso_gene_348|Tiso_gene_9394|Tiso_gene_10876}}
−
{{#set: gene associated=Tiso_gene_11974|Tiso_gene_14791}}
+
{{#set: in pathway=PWY-7049|PWY-7724}}
−
{{#set: in pathway=TRNA-CHARGING-PWY}}
+
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}

Revision as of 16:49, 10 January 2018

Reaction LINOLENOYL-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • long_chain_acyl-_synthetase
    • polyketide_synthase
    • acyl-_synthetase
    • ORF
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 ATP[c] + 1 α-linolenate[c] + 1 coenzyme A[c] => 1 AMP[c] + 1 diphosphate[c] + 1 α-linolenoyl-CoA[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7049, icosapentaenoate biosynthesis II (6-desaturase, mammals): PWY-7049
    • 2 reactions found over 7 reactions in the full pathway
  • PWY-7724, icosapentaenoate biosynthesis III (8-desaturase, mammals): PWY-7724
    • 5 reactions found over 7 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=D-ALANINE&oldid=14832"